Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NSS91_RS06695 Genome accession   NZ_CP155466
Coordinates   1409432..1411249 (+) Length   605 a.a.
NCBI ID   WP_346208348.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0983     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404432..1416249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS91_RS06675 (NSS91_06675) trpS 1404843..1405829 (-) 987 WP_041846032.1 tryptophan--tRNA ligase -
  NSS91_RS06680 (NSS91_06680) spxA 1406557..1406952 (+) 396 WP_034769143.1 transcriptional regulator SpxA -
  NSS91_RS06685 (NSS91_06685) mecA 1407301..1407966 (+) 666 WP_041902142.1 adaptor protein MecA -
  NSS91_RS06690 (NSS91_06690) - 1408134..1409330 (+) 1197 WP_041846034.1 competence protein CoiA family protein -
  NSS91_RS06695 (NSS91_06695) pepF 1409432..1411249 (+) 1818 WP_346208348.1 oligoendopeptidase F Regulator
  NSS91_RS06700 (NSS91_06700) - 1412243..1413241 (-) 999 WP_346208349.1 ClpXP adapter SpxH family protein -
  NSS91_RS06705 (NSS91_06705) - 1413238..1413648 (-) 411 WP_034769151.1 globin -
  NSS91_RS06710 (NSS91_06710) - 1413899..1414510 (-) 612 WP_041846036.1 lytic transglycosylase domain-containing protein -
  NSS91_RS06715 (NSS91_06715) - 1414533..1415117 (-) 585 WP_034769155.1 CYTH domain-containing protein -
  NSS91_RS06720 (NSS91_06720) - 1415469..1416095 (+) 627 WP_095142212.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69947.90 Da        Isoelectric Point: 4.8688

>NTDB_id=996572 NSS91_RS06695 WP_346208348.1 1409432..1411249(+) (pepF) [Caldifermentibacillus hisashii strain FSL W8-0983]
MSTEKAVKKLPARNEIPVKDTWALENIFATDEKWKEEFEQIKAIIPKAFEFQGKLGENADVLYEALQYQDEVMMRLGKLY
TYAHMRYDQDTTNSFYQGMNDQARNLYTQAASAFSFVVPELLAIDENKIRQFLTEKEELKLYEHALEEINLQRPHVLSPE
VEAILAQSTEVTDAPSNTFGMLNNADLEFPSIVDENGEEVEITHGRYIRFLESADRRVRKDAFHALYETYGKFRNTFAST
LSGQVKRNNFYANVRKYKSAREAALSANNIPESVYDNLVETINKNLPLLHRYVALRKKVLGLDELHMYDLYTPLVKDVKM
EVTFEEAKDIVLKGLAPMGEEYLSVLKEGFANRWVDVHENKGKRSGAYSSGAYGTDPYILLNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPFPYGDYSIFVAEVASTCNENLLSEYLLKTLDDDKKRLYILNNYLETFRGTVFRQTMFAEFEHDIHIRSQ
KGEALTAELLTNIYYDLNKKYFGDDVVIDEEIGLEWARIPHFYYNYYVYQYATGLSASTALSKQILEEGEPAVERYIGYL
KSGSSDYPIEVLKKAGVDMTTAEPIENACKVFEEKLTEMERLLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=996572 NSS91_RS06695 WP_346208348.1 1409432..1411249(+) (pepF) [Caldifermentibacillus hisashii strain FSL W8-0983]
ATGTCAACAGAAAAAGCAGTAAAAAAACTGCCGGCAAGAAATGAAATCCCGGTAAAGGATACATGGGCACTGGAAAATAT
TTTTGCAACAGACGAAAAATGGAAAGAGGAGTTTGAGCAGATTAAAGCGATAATTCCTAAAGCTTTTGAATTTCAAGGGA
AACTTGGTGAAAATGCTGACGTTTTATATGAAGCATTGCAATATCAAGATGAAGTGATGATGCGACTGGGGAAATTGTAT
ACATATGCCCATATGCGATATGATCAGGATACGACAAATTCTTTCTATCAAGGAATGAATGATCAAGCGAGAAATTTGTA
TACTCAGGCAGCAAGTGCTTTTTCCTTCGTTGTCCCCGAATTACTGGCGATTGATGAGAATAAAATTCGACAGTTTTTAA
CCGAAAAAGAAGAATTAAAGTTATATGAGCATGCTTTGGAAGAAATTAATTTGCAACGTCCGCATGTATTGTCACCTGAA
GTAGAAGCGATTTTAGCCCAAAGTACAGAAGTGACGGATGCGCCGAGTAATACATTCGGCATGCTAAATAACGCAGACTT
GGAGTTTCCATCTATTGTGGATGAAAACGGAGAAGAAGTCGAAATAACGCACGGCCGTTATATTCGCTTTTTAGAAAGTG
CGGATCGCCGTGTGCGAAAAGATGCGTTTCATGCTTTATATGAAACGTATGGGAAATTTCGAAATACGTTTGCGAGTACA
CTAAGCGGACAAGTAAAACGCAATAATTTTTATGCTAATGTCCGTAAATACAAATCGGCACGGGAAGCCGCACTATCCGC
CAACAATATTCCGGAGTCGGTATATGATAATTTAGTGGAAACAATCAATAAAAACTTGCCGCTTCTACACCGTTATGTCG
CATTACGGAAAAAGGTGCTTGGACTTGATGAATTGCATATGTATGATTTGTATACACCGCTTGTTAAAGATGTCAAAATG
GAAGTGACCTTTGAAGAGGCAAAAGATATCGTCTTAAAAGGATTGGCTCCAATGGGGGAAGAATATCTTTCCGTTTTAAA
AGAAGGGTTTGCCAATCGCTGGGTAGATGTCCATGAAAATAAAGGAAAAAGAAGCGGGGCTTACTCATCCGGAGCGTATG
GAACCGATCCGTATATATTGTTAAACTGGCAAGACAATGTCAATAATTTGTTTACCCTTGCCCATGAATTTGGTCATTCG
GTACATAGTTACTATACAAGGAAATACCAACCATTTCCTTATGGCGATTATTCGATTTTTGTTGCCGAAGTTGCCTCCAC
TTGTAATGAAAATTTATTAAGTGAGTATTTGTTAAAAACATTGGACGATGATAAGAAACGGCTGTACATTTTAAATAATT
ATTTGGAAACATTCCGTGGCACGGTATTCCGGCAGACCATGTTTGCTGAATTTGAACATGATATTCACATTCGTTCCCAA
AAAGGGGAAGCATTGACGGCAGAATTACTGACAAACATTTATTATGATTTAAATAAAAAATATTTTGGTGATGATGTTGT
TATTGACGAGGAAATTGGCTTAGAATGGGCGAGAATTCCACATTTCTACTACAACTATTATGTTTACCAATATGCAACGG
GCTTAAGTGCATCAACGGCATTGAGTAAACAAATTTTAGAAGAAGGAGAGCCTGCCGTAGAACGATATATCGGTTATTTG
AAATCCGGAAGCTCGGATTATCCAATCGAAGTGTTGAAAAAAGCCGGGGTGGATATGACAACGGCGGAACCGATCGAAAA
TGCCTGCAAAGTTTTTGAAGAGAAATTGACTGAAATGGAACGACTTTTAAATAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.602

98.017

0.506

Multiple sequence alignment