Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSS91_RS06180 Genome accession   NZ_CP155466
Coordinates   1301625..1302572 (+) Length   315 a.a.
NCBI ID   WP_034768949.1    Uniprot ID   A0A090ITF9
Organism   Caldifermentibacillus hisashii strain FSL W8-0983     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1296625..1307572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS91_RS06165 (NSS91_06165) argS 1297237..1298943 (+) 1707 WP_034768946.1 arginine--tRNA ligase -
  NSS91_RS06170 (NSS91_06170) - 1299159..1300193 (-) 1035 WP_034768948.1 NADH:flavin oxidoreductase/NADH oxidase -
  NSS91_RS06175 (NSS91_06175) - 1300569..1301318 (+) 750 WP_051989024.1 EAL domain-containing protein -
  NSS91_RS06180 (NSS91_06180) ceuB 1301625..1302572 (+) 948 WP_034768949.1 ABC transporter permease Machinery gene
  NSS91_RS06185 (NSS91_06185) - 1302569..1303519 (+) 951 WP_041848207.1 iron chelate uptake ABC transporter family permease subunit -
  NSS91_RS06190 (NSS91_06190) - 1303513..1304271 (+) 759 WP_034768951.1 ABC transporter ATP-binding protein -
  NSS91_RS06195 (NSS91_06195) - 1304472..1305437 (+) 966 WP_041848208.1 siderophore ABC transporter substrate-binding protein -
  NSS91_RS06200 (NSS91_06200) - 1305707..1306768 (+) 1062 WP_034768953.1 C45 family peptidase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34552.73 Da        Isoelectric Point: 10.0987

>NTDB_id=996567 NSS91_RS06180 WP_034768949.1 1301625..1302572(+) (ceuB) [Caldifermentibacillus hisashii strain FSL W8-0983]
MKKRYLLLVLIILSLISLFIGVSDISVMDIFHLTDKQWQILVVSRIPRLISIIVSGASLSIAGLIMQSLSRNKFVSPTTA
GTMDFARLGILVAMIVFAGAGSLSKMFVAFVFALAGTFLFMKILERIKFKDAIFIPLVGLMLGNIVSSIATFFAYQNDLI
QNISSWLIGDFSIILKGNYELIFISVPLLFIAYLYANKFTIAGMGEDFSKGLGLNYRQVVNLGLIIVALITSSVVLTVGV
IPFLGLIIPNVVSIYRGDHLKNSLAPTAILGAIFVLFCDILGRVIIYPYEIPINLTVGVIGSAIFIYLLLRRQAQ

Nucleotide


Download         Length: 948 bp        

>NTDB_id=996567 NSS91_RS06180 WP_034768949.1 1301625..1302572(+) (ceuB) [Caldifermentibacillus hisashii strain FSL W8-0983]
ATGAAGAAGAGATACCTACTCCTAGTACTGATTATCCTTTCACTTATATCCCTCTTTATCGGGGTATCAGATATTTCAGT
GATGGATATCTTTCATTTAACAGATAAACAATGGCAAATATTAGTAGTCAGTAGAATTCCAAGGCTAATCAGTATTATTG
TCTCGGGGGCATCGCTGAGTATTGCCGGGCTGATTATGCAAAGCTTAAGTCGAAATAAATTCGTCTCACCAACAACAGCG
GGTACGATGGATTTTGCCCGACTGGGAATTCTCGTTGCTATGATTGTTTTTGCCGGTGCCGGTTCACTTAGCAAAATGTT
TGTTGCTTTTGTATTCGCTTTAGCAGGGACCTTCCTGTTTATGAAAATCTTAGAAAGAATTAAATTTAAGGATGCGATAT
TTATCCCGCTTGTCGGGTTAATGCTAGGAAATATTGTCAGTTCAATTGCAACATTTTTTGCCTATCAAAATGATTTAATT
CAAAATATCTCATCATGGTTAATTGGTGATTTTTCCATCATTTTAAAAGGAAATTATGAATTAATTTTTATTAGTGTGCC
ACTCTTGTTTATTGCGTATCTTTATGCCAACAAATTTACAATTGCCGGAATGGGGGAGGATTTTTCAAAAGGTCTTGGTT
TAAACTACCGTCAAGTAGTTAATCTCGGTTTAATCATCGTTGCTCTTATTACATCATCGGTTGTCTTAACCGTTGGGGTA
ATCCCATTTTTGGGCCTTATTATTCCAAATGTTGTTTCGATTTATCGAGGCGATCATTTGAAGAATAGTTTAGCCCCAAC
AGCAATTCTTGGTGCCATTTTTGTTCTGTTTTGCGATATTCTCGGTCGAGTGATTATTTATCCGTATGAAATTCCAATCA
ATTTGACAGTAGGTGTTATTGGCAGTGCAATTTTTATTTACTTATTATTGAGGAGACAGGCACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090ITF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.341

98.73

0.537

Multiple sequence alignment