Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ELZ66_RS11765 Genome accession   NZ_LR133933
Coordinates   2601609..2602961 (-) Length   450 a.a.
NCBI ID   WP_010948032.1    Uniprot ID   Q5ZT39
Organism   Legionella pneumophila strain NCTC12180     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2596609..2607961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ66_RS11750 (NCTC12180_02338) pilU 2597349..2598470 (-) 1122 WP_010948029.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ELZ66_RS11755 (NCTC12180_02339) - 2598560..2600488 (-) 1929 WP_010948030.1 FAD-binding oxidoreductase -
  ELZ66_RS11760 (NCTC12180_02340) - 2600776..2601612 (-) 837 WP_010948031.1 phytanoyl-CoA dioxygenase family protein -
  ELZ66_RS11765 (NCTC12180_02341) radA/sms 2601609..2602961 (-) 1353 WP_010948032.1 DNA repair protein RadA Machinery gene
  ELZ66_RS11770 (NCTC12180_02342) - 2603196..2604089 (+) 894 WP_010948033.1 lpg2327 family Dot/Icm T4SS effector -
  ELZ66_RS11775 (NCTC12180_02343) lem22 2604353..2604736 (+) 384 WP_010948034.1 Dot/Icm T4SS effector Lem22 -
  ELZ66_RS11780 (NCTC12180_02344) - 2604930..2605160 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  ELZ66_RS11785 (NCTC12180_02345) - 2605141..2606037 (+) 897 WP_015444138.1 polyprenyl synthetase family protein -
  ELZ66_RS11790 (NCTC12180_02346) bioC 2606081..2606935 (-) 855 WP_015444137.1 malonyl-ACP O-methyltransferase BioC -
  ELZ66_RS11795 (NCTC12180_02347) comFC 2607093..2607683 (+) 591 WP_015444136.1 ComF family protein Machinery gene

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 48916.58 Da        Isoelectric Point: 7.7495

>NTDB_id=996553 ELZ66_RS11765 WP_010948032.1 2601609..2602961(-) (radA/sms) [Legionella pneumophila strain NCTC12180]
MKVKTQFVCNQCAAIFKQWAGQCTQCGAWNSIVEEGIMPENKTLRSGQWANQRSVITAVEDVVMDKIVRMDCGISELNRV
LGGGLVYGSVVLIGGDPGIGKSTLLLQTLANLSMQETVLYVTGEESLQQVAMRAQRLGLPLAGLRLLAETQVESIIAQAQ
KEKPRIIVVDSVQTIFTEAISSAPGGVSQVRESAAQLVRYAKMTNTAIFLVGHVTKEGTLAGPRVLEHMVDSVLYFEGQN
DSRFRVIRAIKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRQPEPTPGSAVMVTWEGSRPMLVEVQALVDEAHGQQAK
RVTAGLEHNRLAILLAVLHRHGGIATYDQDVFINVVGGVKVTETASDLALLAAVISSLRNRIFDSETIIFGEVGLAGEIR
PVQSGQERIKEAIKHGFKRAIVPFANAPKQQIDSMTVEPVKHLRDVLEKM

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=996553 ELZ66_RS11765 WP_010948032.1 2601609..2602961(-) (radA/sms) [Legionella pneumophila strain NCTC12180]
ATGAAAGTGAAAACCCAGTTTGTTTGTAATCAATGCGCGGCCATTTTTAAACAATGGGCAGGACAATGTACTCAATGTGG
CGCCTGGAATTCCATTGTTGAAGAAGGGATTATGCCTGAAAACAAGACTTTACGAAGTGGGCAATGGGCTAATCAGCGCT
CTGTCATCACTGCTGTTGAAGACGTTGTAATGGACAAAATAGTACGTATGGATTGTGGTATATCCGAGCTCAACCGGGTT
TTGGGAGGGGGGCTGGTTTATGGCTCGGTTGTTTTGATTGGAGGGGATCCGGGGATCGGTAAATCCACCTTACTGTTGCA
AACGCTGGCTAATTTATCTATGCAAGAAACAGTATTGTATGTGACGGGGGAAGAGTCATTACAACAAGTTGCCATGCGTG
CCCAAAGATTGGGACTACCTTTGGCCGGACTGCGGCTATTGGCAGAAACTCAGGTTGAATCCATCATTGCTCAAGCCCAA
AAGGAAAAGCCGCGAATTATTGTCGTCGATTCAGTACAAACGATATTCACTGAAGCCATAAGTTCTGCTCCGGGAGGAGT
TAGTCAAGTCAGGGAATCGGCAGCACAATTGGTGCGTTATGCCAAGATGACCAATACGGCCATCTTCCTGGTAGGGCATG
TCACCAAGGAAGGAACATTAGCCGGGCCTCGGGTGTTAGAACATATGGTTGATAGTGTTCTCTATTTTGAGGGGCAAAAT
GATAGCCGCTTCAGAGTCATTCGCGCCATTAAAAATCGTTTTGGCGCTGTCAATGAATTAGGTGTATTTGCGATGACTGA
CAAAGGCCTGAAGGAGGTAGCCAACCCCTCAGCTATTTTTTTATCTCGCCAGCCCGAACCTACGCCTGGCAGTGCAGTGA
TGGTGACTTGGGAAGGATCAAGACCCATGTTGGTAGAAGTACAAGCATTGGTTGATGAGGCCCACGGTCAGCAAGCGAAA
CGCGTTACTGCGGGTCTTGAGCATAATCGCCTGGCTATCTTGTTAGCTGTTTTACACCGTCATGGAGGTATCGCTACTTA
CGATCAGGATGTTTTTATCAATGTAGTCGGGGGAGTGAAAGTGACTGAAACAGCGAGTGATTTGGCTTTGTTGGCTGCAG
TGATTTCAAGTTTACGTAATCGTATATTTGATAGTGAAACCATCATATTCGGTGAAGTGGGATTAGCGGGGGAAATCAGA
CCAGTGCAAAGTGGTCAAGAACGCATTAAGGAGGCTATAAAACATGGATTCAAGCGTGCTATAGTCCCTTTTGCCAATGC
TCCCAAACAGCAAATCGATTCCATGACGGTAGAGCCAGTTAAACATTTGCGAGATGTATTGGAGAAAATGTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

AAA domain (AAA_25)

(73-218)

Subunit ChlI of Mg-chelatase (ChlI)

(328-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZT39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.26

95.778

0.462
  radA Streptococcus mitis SK321

48.104

93.778

0.451
  radA Streptococcus pneumoniae Rx1

48.104

93.778

0.451
  radA Streptococcus pneumoniae D39

48.104

93.778

0.451
  radA Streptococcus pneumoniae R6

48.104

93.778

0.451
  radA Streptococcus pneumoniae TIGR4

48.104

93.778

0.451
  radA Streptococcus mitis NCTC 12261

47.867

93.778

0.449