Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   T556_RS12890 Genome accession   NZ_CP003974
Coordinates   2157831..2158337 (+) Length   168 a.a.
NCBI ID   WP_003687075.1    Uniprot ID   Q5F534
Organism   Neisseria gonorrhoeae NG-k51.05     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2152831..2163337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T556_RS12855 (T556_11885) - 2153268..2154803 (+) 1536 WP_010359695.1 sodium-dependent transporter -
  T556_RS12860 (T556_11890) - 2154800..2154892 (+) 93 WP_010356218.1 methionine/alanine import family NSS transporter small subunit -
  T556_RS12865 (T556_11895) - 2154928..2155368 (-) 441 WP_003694629.1 hypothetical protein -
  T556_RS12870 (T556_11900) lysA 2155562..2156782 (-) 1221 WP_010356219.1 diaminopimelate decarboxylase -
  T556_RS12875 (T556_11905) lptM 2156793..2156963 (-) 171 WP_010356220.1 LPS translocon maturation chaperone LptM -
  T556_RS12880 (T556_11910) cyaY 2157034..2157357 (+) 324 WP_002226758.1 iron donor protein CyaY -
  T556_RS12885 (T556_11915) - 2157390..2157809 (+) 420 WP_003687072.1 DUF2251 domain-containing protein -
  T556_RS12890 (T556_11920) luxS 2157831..2158337 (+) 507 WP_003687075.1 S-ribosylhomocysteine lyase Regulator
  T556_RS12895 (T556_11925) polA 2158481..2161273 (+) 2793 WP_003687077.1 DNA polymerase I -
  T556_RS12905 (T556_11930) - 2161835..2162530 (+) 696 WP_003690406.1 Fic family protein -
  T556_RS13790 - 2162522..2162632 (-) 111 Protein_2205 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18623.45 Da        Isoelectric Point: 5.9060

>NTDB_id=99654 T556_RS12890 WP_003687075.1 2157831..2158337(+) (luxS) [Neisseria gonorrhoeae NG-k51.05]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGAGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPELNEYQCGTYLMHSLAEAQQIAQNVLARKVAVNRNGDLA
LDESLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=99654 T556_RS12890 WP_003687075.1 2157831..2158337(+) (luxS) [Neisseria gonorrhoeae NG-k51.05]
ATGCCCCTGTTAGACAGTTTCAAAGTCGATCACACCCGTATGCACGCCCCTGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACTGTATTCGACCTGCGCTTTTGCATCCCCAATAAAGAAATCCTGCCCGAAAAAGGCATCC
ACACGCTGGAGCATTTGTTTGCCGGCTTTATGCGCGACCACTTGAACGGCGCCGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTTTATATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTTGCCGATGCGTGGTTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGTAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCTGATGC
ACTCGCTCGCCGAAGCGCAACAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTTAACCGAAACGGCGATTTGGCT
TTGGATGAAAGCCTGCTGAACGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F534

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

78.443

99.405

0.78