Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NSQ96_RS06285 Genome accession   NZ_CP155465
Coordinates   1290330..1292147 (+) Length   605 a.a.
NCBI ID   WP_342014811.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-2851     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1285330..1297147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ96_RS06265 (NSQ96_06265) spxA 1285758..1286153 (+) 396 WP_034769143.1 transcriptional regulator SpxA -
  NSQ96_RS06270 (NSQ96_06270) - 1286275..1287633 (+) 1359 WP_346200735.1 transposase family protein -
  NSQ96_RS06275 (NSQ96_06275) mecA 1288198..1288863 (+) 666 WP_034769145.1 adaptor protein MecA -
  NSQ96_RS06280 (NSQ96_06280) - 1289032..1290228 (+) 1197 WP_251241862.1 competence protein CoiA family protein -
  NSQ96_RS06285 (NSQ96_06285) pepF 1290330..1292147 (+) 1818 WP_342014811.1 oligoendopeptidase F Regulator
  NSQ96_RS06290 (NSQ96_06290) - 1293241..1294263 (-) 1023 WP_346200736.1 ClpXP adapter SpxH family protein -
  NSQ96_RS06295 (NSQ96_06295) - 1294260..1294670 (-) 411 WP_034769151.1 globin -
  NSQ96_RS06300 (NSQ96_06300) - 1294920..1295531 (-) 612 WP_346200737.1 lytic transglycosylase domain-containing protein -
  NSQ96_RS06305 (NSQ96_06305) - 1295554..1296138 (-) 585 WP_034769155.1 CYTH domain-containing protein -
  NSQ96_RS06310 (NSQ96_06310) - 1296495..1297121 (+) 627 WP_041846037.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70046.01 Da        Isoelectric Point: 4.9096

>NTDB_id=996525 NSQ96_RS06285 WP_342014811.1 1290330..1292147(+) (pepF) [Caldifermentibacillus hisashii strain FSL K6-2851]
MSTEKAVKKLPARNEIPVKDTWALENIFATDEKWKEEFEQIKAIIPKAFEFQGKLGENADVLYEALQYQDEVMMRLGKLY
TYAHMRYDQDTTNSFYQGMNDQARNLYTQAASAFSFVVPELLAIDENKIRQFLTEKEELKLYEHALEEINLQRPHVLSPE
VEAILAQSAEVTDAPSNTFGMLNNADLEFPSIVDENGEEVEITHGRYIRFLESADRRVRKDAFHALYETYRKFRNTFAST
LSGQVKRNNFYANVRKYKSAREAALSANNIPESVYDNLVETINKNLPLLHRYVALRKKVLGLDELHMYDLYTPLVKDVKM
EVTFEEAKDIVLKGLAPMGEEYLSVLKEGFANRWVDVHENKGKRSGAYSSGAYGTDPYILLNWQDSVNNLFTLAHEFGHS
VHSYYTRKYQPFPYGDYSIFVAEVASTCNENLLSEYLLKTLDDDRKRLYILNNYLETFRGTVFRQTMFAEFEHDIHIRSQ
KGEALTAELLTNIYYDLNKKYFGDDVVIDEEIGLEWARIPHFYYNYYVYQYATGLSASTALSKQILEEGEPAVERYIGYL
KSGSSDYPIEVLKKAGVDMTTAEPIENACKVFEEKLTEMERLLNR

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=996525 NSQ96_RS06285 WP_342014811.1 1290330..1292147(+) (pepF) [Caldifermentibacillus hisashii strain FSL K6-2851]
ATGTCAACAGAAAAAGCAGTAAAAAAACTGCCGGCAAGAAATGAAATCCCGGTAAAGGATACATGGGCACTGGAAAATAT
TTTTGCAACAGACGAAAAATGGAAAGAGGAGTTTGAGCAGATTAAAGCGATAATTCCTAAAGCTTTTGAATTTCAAGGGA
AACTTGGTGAAAATGCTGACGTTTTATATGAGGCATTGCAATATCAAGATGAAGTGATGATGCGACTGGGGAAATTGTAT
ACATATGCCCATATGCGATATGATCAGGATACGACAAATTCTTTCTATCAAGGAATGAATGATCAAGCGAGAAATTTGTA
TACTCAGGCAGCAAGTGCTTTTTCCTTCGTTGTCCCCGAATTACTGGCGATTGATGAGAATAAAATCCGGCAGTTTTTAA
CCGAAAAAGAAGAATTAAAGTTATATGAGCATGCTTTGGAAGAAATTAATTTGCAACGTCCTCATGTATTGTCACCTGAA
GTAGAAGCGATTTTAGCCCAAAGTGCAGAGGTGACGGATGCGCCGAGTAATACATTCGGCATGCTAAATAACGCAGACTT
GGAGTTTCCATCTATTGTGGATGAAAACGGAGAAGAAGTCGAAATAACGCACGGCCGATATATTCGCTTTTTAGAAAGTG
CGGATCGCCGTGTGCGAAAAGATGCGTTTCATGCTTTATATGAAACGTATAGGAAATTCCGAAATACGTTTGCGAGTACA
CTAAGCGGACAAGTAAAACGCAATAATTTTTATGCTAATGTCCGTAAATACAAATCGGCACGGGAAGCCGCGCTATCCGC
CAACAATATTCCGGAGTCGGTATATGATAATTTAGTGGAAACAATCAATAAAAACTTGCCGCTTTTACACCGTTATGTCG
CATTACGGAAAAAGGTGCTTGGACTTGATGAATTGCATATGTATGATTTGTATACACCGCTTGTTAAAGATGTCAAAATG
GAAGTGACCTTTGAAGAGGCAAAAGACATCGTCTTAAAAGGATTGGCTCCAATGGGGGAAGAATATCTTTCCGTGTTAAA
AGAAGGGTTTGCCAATCGCTGGGTAGATGTCCATGAAAATAAAGGAAAAAGAAGCGGGGCTTACTCATCCGGAGCGTATG
GAACCGATCCGTATATATTGTTAAACTGGCAAGACAGTGTCAATAATTTGTTTACCCTTGCCCATGAATTTGGTCATTCG
GTACATAGTTACTATACAAGGAAATACCAACCATTTCCTTATGGCGATTATTCGATTTTTGTTGCCGAAGTTGCCTCCAC
TTGTAATGAAAATTTATTAAGTGAGTATTTGTTAAAAACATTGGACGATGATAGAAAACGGCTGTACATTTTAAATAATT
ATTTGGAAACATTCCGTGGCACGGTATTCCGGCAGACCATGTTTGCTGAATTTGAACATGATATTCACATTCGTTCCCAA
AAAGGGGAAGCATTGACGGCAGAATTACTGACAAACATTTATTATGATTTAAATAAAAAATATTTTGGTGATGATGTTGT
TATTGACGAGGAAATTGGCTTAGAATGGGCGAGAATTCCACATTTCTACTACAACTATTATGTTTACCAATATGCAACGG
GCTTAAGTGCATCAACGGCATTGAGTAAACAAATTTTAGAAGAAGGAGAGCCTGCCGTAGAACGATATATCGGTTATTTG
AAATCCGGAAGCTCGGATTATCCAATCGAAGTGTTGAAAAAAGCCGGGGTGGATATGACAACGGCGGAACCGATCGAAAA
TGCCTGCAAAGTTTTTGAAGAGAAATTGACTGAAATGGAACGACTATTAAATAGATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-589)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.265

98.017

0.502

Multiple sequence alignment