Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABDE90_RS01630 Genome accession   NZ_CP155458
Coordinates   344904..345722 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 2024CK-00329     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339904..350722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDE90_RS01595 (ABDE90_01590) - 340486..340616 (-) 131 Protein_305 hypothetical protein -
  ABDE90_RS01600 (ABDE90_01595) rpoZ 340655..340933 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABDE90_RS01605 (ABDE90_01600) gmk 341006..341635 (-) 630 WP_000015937.1 guanylate kinase -
  ABDE90_RS01610 (ABDE90_01605) ispH 341758..342708 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABDE90_RS01615 (ABDE90_01610) fimU 342878..343351 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABDE90_RS01620 (ABDE90_01615) pilV 343345..343905 (+) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  ABDE90_RS01625 (ABDE90_01620) pilW 343906..344907 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  ABDE90_RS01630 (ABDE90_01625) pilX 344904..345722 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABDE90_RS01635 (ABDE90_01630) pilY1 345734..349588 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  ABDE90_RS01640 (ABDE90_01635) pilY2 349601..350083 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ABDE90_RS01645 (ABDE90_01640) pilE 350080..350505 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=996458 ABDE90_RS01630 WP_000149374.1 344904..345722(+) (pilX) [Acinetobacter baumannii strain 2024CK-00329]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=996458 ABDE90_RS01630 WP_000149374.1 344904..345722(+) (pilX) [Acinetobacter baumannii strain 2024CK-00329]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment