Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ELZ45_RS03980 Genome accession   NZ_LR133917
Coordinates   785584..786666 (+) Length   360 a.a.
NCBI ID   WP_001805005.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC8317     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 780584..791666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ45_RS03960 (NCTC8317_00736) - 780954..782024 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  ELZ45_RS03965 (NCTC8317_00737) - 782342..783397 (+) 1056 WP_000258151.1 MraY family glycosyltransferase -
  ELZ45_RS03970 (NCTC8317_00738) - 783569..784210 (-) 642 WP_000192949.1 YigZ family protein -
  ELZ45_RS03975 (NCTC8317_00739) fakB1 784354..785220 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  ELZ45_RS03980 (NCTC8317_00740) comFA 785584..786666 (+) 1083 WP_001805005.1 DEAD/DEAH box helicase Machinery gene
  ELZ45_RS03985 (NCTC8317_00741) - 786659..787333 (+) 675 WP_001057968.1 ComF family protein -
  ELZ45_RS03990 (NCTC8317_00742) raiA 787394..787966 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  ELZ45_RS03995 (NCTC8317_00743) secA 788380..790911 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  ELZ45_RS04000 - 790953..791052 (+) 100 Protein_743 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42025.60 Da        Isoelectric Point: 9.8922

>NTDB_id=996434 ELZ45_RS03980 WP_001805005.1 785584..786666(+) (comFA) [Staphylococcus aureus strain NCTC8317]
MDNVTRYKITESSQSSSQAYYHLSFALSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=996434 ELZ45_RS03980 WP_001805005.1 785584..786666(+) (comFA) [Staphylococcus aureus strain NCTC8317]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGCATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.053

93.889

0.367

Multiple sequence alignment