Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V8Y39_RS05175 Genome accession   NZ_CP155444
Coordinates   1074601..1076283 (+) Length   560 a.a.
NCBI ID   WP_002343032.1    Uniprot ID   -
Organism   Enterococcus faecium strain NPLps07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1069601..1081283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8Y39_RS05145 (V8Y39_05150) - 1069887..1070741 (+) 855 WP_002343033.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  V8Y39_RS05150 (V8Y39_05155) xseA 1070742..1072079 (+) 1338 WP_002315413.1 exodeoxyribonuclease VII large subunit -
  V8Y39_RS05155 (V8Y39_05160) - 1072084..1072308 (+) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  V8Y39_RS05160 (V8Y39_05165) - 1072310..1073200 (+) 891 WP_002329021.1 polyprenyl synthetase family protein -
  V8Y39_RS05165 (V8Y39_05170) - 1073209..1074027 (+) 819 WP_002291881.1 TlyA family RNA methyltransferase -
  V8Y39_RS05170 (V8Y39_05175) - 1074134..1074583 (+) 450 WP_002291879.1 arginine repressor -
  V8Y39_RS05175 (V8Y39_05180) recN 1074601..1076283 (+) 1683 WP_002343032.1 DNA repair protein RecN Machinery gene
  V8Y39_RS05180 (V8Y39_05185) - 1076339..1076455 (-) 117 WP_002291876.1 DUF4044 domain-containing protein -
  V8Y39_RS05185 (V8Y39_05190) - 1076528..1077484 (-) 957 WP_002291874.1 magnesium transporter CorA family protein -
  V8Y39_RS05190 (V8Y39_05195) - 1077655..1078023 (+) 369 WP_002291871.1 DUF3397 domain-containing protein -
  V8Y39_RS05195 (V8Y39_05200) mraZ 1078193..1078624 (+) 432 WP_002291870.1 division/cell wall cluster transcriptional repressor MraZ -
  V8Y39_RS05200 (V8Y39_05205) rsmH 1078645..1079604 (+) 960 WP_002291868.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  V8Y39_RS05205 (V8Y39_05210) ftsL 1079609..1080010 (+) 402 WP_002291866.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63348.70 Da        Isoelectric Point: 4.5791

>NTDB_id=996361 V8Y39_RS05175 WP_002343032.1 1074601..1076283(+) (recN) [Enterococcus faecium strain NPLps07]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCILEGLFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRKIGSYLVDIQGQNEHQELLQPESHLALLDRFGDAAFQQKKK
SYQQEYTSYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIAAADLQVGEEEKLKEEREKLSNYQKVADGLAAGYGALTNN
EQNSVDGVGLAVAELQGIAHLDVEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDENRLEEVTQRLELIRQLKRKYGES
IESILAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISKYSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLQLARRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=996361 V8Y39_RS05175 WP_002343032.1 1074601..1076283(+) (recN) [Enterococcus faecium strain NPLps07]
ATGCTACAAGAAATCAGTATTACTAACTTTGCGATTATTCCGGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATCATTATCGATGCTTTAGGTTTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGCGCAGAAAAATGCATTCTTGAAGGATTGTTTGAACTTCCGAAACAAGAAGGATTCTCTGAATTGATG
GTTGAATTAGGTATCGAAACGGATGAAGACAATCTGATCGTTCGACGAGATATGTCGTTGACTGGAAAAAATGTTTGCCG
AGTGAATGGTCACATCATCACGCTAGCTAATCTAAGGAAAATCGGCAGTTATTTAGTGGATATCCAAGGGCAAAACGAAC
ATCAGGAACTGCTCCAGCCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGCAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATACCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTCCATTTCCAGCAAGAAGAAATAGCTGCTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAGTTGCTGATGGATTAGCTGCAGGCTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGCGTTGGCTTGGCCGTTGCAGAATTGCAAGGGATCGCACATCTAGATGTGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGTTACAAGATGCAATCGGAGACATGAGTCGTCAAATCGATTTGTTGG
AGTTAGATGAGAACCGTTTAGAAGAAGTGACTCAACGTCTAGAATTAATCCGACAGTTGAAACGCAAATATGGCGAATCC
ATTGAGTCGATATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTGCATGAATTAAAAAGTCTGTATATGGAAAACACTGAGTTTGAAGTACGTTTCTTA
AAAGAAGAAAACAGACAATTGAATCATGATGGGTTTGACCAAATCGAATTCTACATTACGACCAATCCAGGAGAGCCGCT
GAAGCCTTTAGTGAAAGTCGCTTCTGGTGGCGAATTATCTCGGATGTTACTGGCTTTGAAAACGATTTTTTCTTCTGAGC
AAGGTGTGACAAGTATTATCTTTGATGAAGTGGATACAGGTGTAAGTGGAAGAGTTGCACAAGCCATCGCGGATAAAATT
TCTCAAATATCGAAATACTCTCAAGTTTTGTGCATCACTCATCTACCGCAAGTCGCCGCAGTCGCCGACTATCAATATTA
TATCGTGAAAGCAGTGATTGATGGTCGTACGCAAACTTCTGTTTCAGAATTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGCATGCTAGCTGGAAGTGAGATTACAAAACTGACACTCGAACATGCAAAAGAACTATTGCAACTCGCAAGAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.5

Multiple sequence alignment