Detailed information NTG0996359

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FVE81_RS05650
• Genome accession: NZ_LR130564
• Coordinates: 1155255..1156247 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MS14387 isolate MS14387
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1150255..1161247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FVE81_RS05620	ispD	1150316..1151026 (+)	711	WP_000246141.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FVE81_RS05625	ispF	1151026..1151505 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FVE81_RS05630	truD	1151502..1152551 (+)	1050	WP_146620604.1	tRNA pseudouridine(13) synthase TruD	-
FVE81_RS05635	surE	1152532..1153293 (+)	762	WP_001305779.1	5'/3'-nucleotidase SurE	-
FVE81_RS05640	pcm	1153287..1153913 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FVE81_RS05645	nlpD	1154053..1155192 (+)	1140	WP_001272592.1	murein hydrolase activator NlpD	-
FVE81_RS05650	rpoS	1155255..1156247 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FVE81_RS05655	-	1156368..1156775 (-)	408	WP_001208065.1	MarR family transcriptional regulator	-
FVE81_RS05660	-	1156922..1157515 (+)	594	WP_001237176.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FVE81_RS05665	-	1157515..1158942 (+)	1428	WP_000863184.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FVE81_RS05670	-	1158953..1159189 (+)	237	WP_000562983.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FVE81_RS05675	pphB	1159231..1159887 (-)	657	WP_001139307.1	protein-serine/threonine phosphatase	-
FVE81_RS05680	-	1159912..1160775 (-)	864	WP_001223109.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=996359 FVE81_RS05650 WP_000081550.1 1155255..1156247(+) (rpoS) [Escherichia coli strain MS14387 isolate MS14387]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=996359 FVE81_RS05650 WP_000081550.1 1155255..1156247(+) (rpoS) [Escherichia coli strain MS14387 isolate MS14387]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGACGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
GAAAGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCTGAAGAGGAGCTGTTATCGCAAGGGGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCGCCACTGTTAACGGCCGAAGAAGAAGTTTATTTCGCG
CGTCGCGCACTGCGTGGAGATGTCGCTTCACGTCGCCGGATGATTGAAAGTAACCTGCGTCTGGTCGTGAAGATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGCTGTTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATCCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715