Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EW037_RS23120 Genome accession   NZ_LR130562
Coordinates   4790749..4791774 (+) Length   341 a.a.
NCBI ID   WP_000644908.1    Uniprot ID   -
Organism   Escherichia coli strain MS14384 isolate MS14384     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4785749..4796774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW037_RS23110 rpmE 4787980..4788192 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  EW037_RS23115 priA 4788395..4790593 (+) 2199 WP_001550368.1 primosomal protein N' Machinery gene
  EW037_RS23120 cytR 4790749..4791774 (+) 1026 WP_000644908.1 DNA-binding transcriptional regulator CytR Regulator
  EW037_RS23125 ftsN 4791866..4792825 (+) 960 WP_000068834.1 cell division protein FtsN -
  EW037_RS23130 hslV 4792918..4793448 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  EW037_RS23135 hslU 4793458..4794789 (+) 1332 WP_001293344.1 HslU--HslV peptidase ATPase subunit -
  EW037_RS23140 menA 4794856..4795782 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  EW037_RS23145 rraA 4795875..4796360 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  EW037_RS23150 zapB 4796445..4796690 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37847.80 Da        Isoelectric Point: 6.3842

>NTDB_id=996328 EW037_RS23120 WP_000644908.1 4790749..4791774(+) (cytR) [Escherichia coli strain MS14384 isolate MS14384]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=996328 EW037_RS23120 WP_000644908.1 4790749..4791774(+) (cytR) [Escherichia coli strain MS14384 isolate MS14384]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

65.138

95.894

0.625