Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABDA66_RS08985 Genome accession   NZ_CP155431
Coordinates   1825913..1827715 (+) Length   600 a.a.
NCBI ID   WP_057773016.1    Uniprot ID   -
Organism   Pediococcus inopinatus strain DMPI11     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1820913..1832715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDA66_RS08960 (ABDA66_08940) - 1821633..1822142 (-) 510 WP_057775610.1 hypothetical protein -
  ABDA66_RS08965 (ABDA66_08945) - 1822348..1823088 (+) 741 WP_057775608.1 MBL fold metallo-hydrolase -
  ABDA66_RS08970 (ABDA66_08950) spxA 1823422..1823820 (+) 399 WP_063697853.1 transcriptional regulator SpxA -
  ABDA66_RS08975 (ABDA66_08955) - 1823946..1824659 (+) 714 WP_063697851.1 adaptor protein MecA -
  ABDA66_RS08980 (ABDA66_08960) - 1824758..1825870 (+) 1113 WP_063697847.1 competence protein CoiA -
  ABDA66_RS08985 (ABDA66_08965) pepF 1825913..1827715 (+) 1803 WP_057773016.1 oligoendopeptidase F Regulator
  ABDA66_RS08990 (ABDA66_08970) - 1827795..1828409 (-) 615 WP_063697844.1 DsbA family protein -
  ABDA66_RS08995 (ABDA66_08975) - 1828683..1829333 (+) 651 WP_057773020.1 GTP pyrophosphokinase family protein -
  ABDA66_RS09000 (ABDA66_08980) - 1829340..1830146 (+) 807 WP_063697841.1 NAD kinase -
  ABDA66_RS09005 (ABDA66_08985) - 1830136..1831041 (+) 906 WP_063697838.1 RluA family pseudouridine synthase -
  ABDA66_RS09010 (ABDA66_08990) mgtE 1831060..1832412 (+) 1353 WP_057773027.1 magnesium transporter -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68680.30 Da        Isoelectric Point: 5.4934

>NTDB_id=996323 ABDA66_RS08985 WP_057773016.1 1825913..1827715(+) (pepF) [Pediococcus inopinatus strain DMPI11]
MSEIKQLPKRSEVPIELTWDLSTIFKNKEAVNKAIAELHPRVNELVKLAGGLDKDSNSLLTAIRSELEIESQLERIYVYA
ELKNDQDTSNNQNQALKDQVTSLVAKVSAKLAWFEPEILAIPKATLEKYQENNTELKPYQHYFEVLNLKKNHVLTTKEEA
ILAGAGSVFEVSSNVFGILDNSDLKFPFVKDEAGEAVQLSQGVYSTLLQSTEQSVRKEAFEQLYAVYEQFKNTFAMTLAG
EVKVHNFKAQIRGYKDARQAAMSANAIPESVYSNLITEVHDHLDLLHRYVGLRKKILNLKELHMYDLYTPITGKSPLSYT
YQEAQKEAKAALQIMGSDYVGHVEDAFKNRWIDVVENEGKRSGAYSSGVYGTNPFMLLNWHNDLDNLFTLVHEMGHSMHS
YYTTHNQPYQYGDYPIFVAEIASTTNENILTQYLLDKYDDPQIKLFVLNHYLDGFKGTVYRQTQFAEFEQFIHETDARGE
ALTAEMMSDYYGKLNHRYYGNDVINDSQIKSEWTRIPHFYYNFYVYQYATGFAAASTLANGISSKEPHARENYLNYLKSG
SSDFPLNVMKKAGVNMAEKQYLEDAFAVFEKRLNEFEALL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=996323 ABDA66_RS08985 WP_057773016.1 1825913..1827715(+) (pepF) [Pediococcus inopinatus strain DMPI11]
ATGTCGGAAATTAAGCAATTACCAAAACGTAGTGAAGTACCAATTGAATTAACTTGGGATCTTTCAACAATTTTTAAAAA
TAAAGAGGCTGTTAATAAGGCTATCGCCGAGTTACATCCACGGGTAAATGAGCTAGTGAAGCTTGCTGGTGGTCTGGACA
AGGACAGCAATAGTTTGCTAACAGCTATTCGAAGCGAGCTTGAAATTGAAAGCCAACTGGAACGTATTTATGTTTATGCA
GAACTAAAAAATGATCAAGATACTTCAAATAATCAAAATCAAGCACTAAAAGATCAAGTCACTAGTTTAGTGGCCAAGGT
GTCTGCAAAATTAGCTTGGTTTGAACCAGAAATTTTAGCAATCCCTAAAGCTACTCTGGAAAAATATCAAGAAAATAATA
CAGAACTAAAACCTTATCAGCATTACTTTGAAGTACTTAACTTAAAGAAAAATCATGTTCTTACAACAAAAGAAGAAGCC
ATTTTGGCTGGTGCAGGATCCGTTTTTGAAGTTTCTTCTAATGTTTTTGGAATCTTAGATAATTCTGATCTCAAGTTTCC
GTTCGTAAAAGATGAGGCCGGAGAAGCGGTCCAATTGTCTCAAGGCGTGTATTCAACCCTGCTGCAGTCAACTGAGCAGT
CTGTTCGTAAAGAAGCCTTTGAACAGCTTTACGCAGTGTATGAGCAGTTTAAAAATACGTTTGCCATGACACTTGCCGGA
GAAGTCAAGGTTCATAATTTCAAAGCACAAATTAGAGGGTATAAAGATGCCCGTCAGGCTGCTATGAGTGCAAATGCAAT
TCCAGAATCGGTTTATTCTAATTTGATAACTGAGGTGCATGATCATTTGGATTTACTTCATAGGTATGTCGGTTTACGGA
AGAAGATTCTTAATTTAAAAGAATTACATATGTATGATTTATACACACCGATTACAGGAAAATCGCCTTTAAGCTACACG
TATCAGGAAGCACAAAAAGAAGCTAAAGCAGCCCTTCAAATTATGGGTAGTGATTATGTGGGCCACGTGGAGGACGCGTT
TAAGAACCGGTGGATTGATGTTGTTGAAAATGAAGGTAAAAGAAGTGGTGCTTATTCTTCAGGTGTGTATGGGACCAATC
CGTTCATGCTACTTAACTGGCACAATGATTTGGACAATTTATTTACATTGGTCCATGAGATGGGACACAGTATGCACAGC
TACTACACAACCCATAATCAACCTTATCAATATGGTGATTATCCGATTTTTGTTGCTGAAATTGCGTCGACAACTAATGA
AAATATTTTGACACAGTATCTTTTAGATAAGTATGATGATCCACAAATTAAGTTGTTCGTGCTGAACCATTATCTAGATG
GATTTAAAGGGACAGTTTATCGACAAACACAATTTGCCGAATTTGAACAATTTATTCATGAGACAGATGCCCGCGGAGAA
GCCCTAACTGCAGAAATGATGTCGGATTATTACGGTAAATTAAATCATCGTTATTATGGGAATGATGTGATAAATGATTC
ACAAATTAAATCAGAATGGACTCGGATCCCGCACTTTTACTATAATTTTTATGTTTATCAATATGCAACTGGTTTTGCGG
CTGCATCAACTTTGGCTAACGGTATTTCATCAAAAGAACCACATGCAAGGGAAAACTATTTAAACTATTTGAAGTCAGGT
AGTTCTGATTTTCCTTTGAATGTGATGAAAAAAGCCGGGGTTAATATGGCTGAAAAACAATATTTAGAAGACGCGTTTGC
TGTGTTTGAAAAGCGCTTGAATGAATTCGAAGCCTTACTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.178

99

0.507

Multiple sequence alignment