Detailed information NTG0996214

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AAFX13_RS22600
• Genome accession: NZ_CP155084
• Coordinates: 3034268..3035257 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain TBV028
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3029268..3040257

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFX13_RS22585 (AAFX13_22590)	recA	3029816..3030859 (-)	1044	WP_023623298.1	recombinase RecA	Machinery gene
AAFX13_RS22590 (AAFX13_22595)	pncC	3031060..3031542 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
AAFX13_RS22595 (AAFX13_22600)	mutS	3031627..3034188 (+)	2562	WP_025610927.1	DNA mismatch repair protein MutS	-
AAFX13_RS22600 (AAFX13_22605)	rpoS	3034268..3035257 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
AAFX13_RS22605 (AAFX13_22610)	-	3035338..3036261 (-)	924	WP_031815627.1	peptidoglycan DD-metalloendopeptidase family protein	-
AAFX13_RS22610 (AAFX13_22615)	-	3036276..3036902 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AAFX13_RS22615 (AAFX13_22620)	surE	3036902..3037678 (-)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
AAFX13_RS22620 (AAFX13_22625)	truD	3037678..3038721 (-)	1044	WP_025500980.1	tRNA pseudouridine(13) synthase TruD	-
AAFX13_RS22625 (AAFX13_22630)	ispF	3038768..3039244 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AAFX13_RS22630 (AAFX13_22635)	ispD	3039262..3039966 (-)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AAFX13_RS22635 (AAFX13_22640)	ftsB	3039968..3040249 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=996214 AAFX13_RS22600 WP_005478537.1 3034268..3035257(-) (rpoS) [Vibrio parahaemolyticus strain TBV028]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=996214 AAFX13_RS22600 WP_005478537.1 3034268..3035257(-) (rpoS) [Vibrio parahaemolyticus strain TBV028]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACACTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851