Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AAFX13_RS22470 Genome accession   NZ_CP155084
Coordinates   3012160..3012678 (-) Length   172 a.a.
NCBI ID   WP_031816186.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TBV028     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3007160..3017678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX13_RS22445 (AAFX13_22450) rimM 3007268..3007816 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  AAFX13_RS22450 (AAFX13_22455) rpsP 3007845..3008093 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  AAFX13_RS22455 (AAFX13_22460) ffh 3008303..3009685 (-) 1383 WP_005462555.1 signal recognition particle protein -
  AAFX13_RS22460 (AAFX13_22465) - 3009898..3010692 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  AAFX13_RS22465 (AAFX13_22470) - 3010818..3012098 (+) 1281 WP_031816187.1 HlyC/CorC family transporter -
  AAFX13_RS22470 (AAFX13_22475) luxS 3012160..3012678 (-) 519 WP_031816186.1 S-ribosylhomocysteine lyase Regulator
  AAFX13_RS22475 (AAFX13_22480) - 3012745..3013350 (-) 606 WP_005484861.1 hypothetical protein -
  AAFX13_RS22480 (AAFX13_22485) gshA 3013375..3014943 (-) 1569 WP_005462538.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18990.71 Da        Isoelectric Point: 4.7134

>NTDB_id=996211 AAFX13_RS22470 WP_031816186.1 3012160..3012678(-) (luxS) [Vibrio parahaemolyticus strain TBV028]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLFAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKSILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=996211 AAFX13_RS22470 WP_031816186.1 3012160..3012678(-) (luxS) [Vibrio parahaemolyticus strain TBV028]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTTCGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAGCATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTACCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment