Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   AAFX13_RS22195 Genome accession   NZ_CP155084
Coordinates   2941819..2945205 (+) Length   1128 a.a.
NCBI ID   WP_005461251.1    Uniprot ID   Q87LY0
Organism   Vibrio parahaemolyticus strain TBV028     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2936819..2950205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX13_RS22175 (AAFX13_22180) erpA 2937173..2937514 (-) 342 WP_005461279.1 iron-sulfur cluster insertion protein ErpA -
  AAFX13_RS22180 (AAFX13_22185) hemL 2937762..2939057 (+) 1296 WP_005479079.1 glutamate-1-semialdehyde 2,1-aminomutase -
  AAFX13_RS22185 (AAFX13_22190) - 2939395..2940480 (+) 1086 WP_031816201.1 AI-2E family transporter -
  AAFX13_RS22190 (AAFX13_22195) rsmC 2940567..2941592 (+) 1026 WP_025818588.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  AAFX13_RS22195 (AAFX13_22200) chiS 2941819..2945205 (+) 3387 WP_005461251.1 response regulator Regulator
  AAFX13_RS22200 (AAFX13_22205) - 2946114..2947796 (+) 1683 WP_005461274.1 ABC transporter substrate-binding protein -
  AAFX13_RS22205 (AAFX13_22210) - 2947967..2948953 (+) 987 WP_005461259.1 ABC transporter permease -
  AAFX13_RS22210 (AAFX13_22215) - 2948956..2949981 (+) 1026 WP_005461261.1 ABC transporter permease -

Sequence

Protein


Download         Length: 1128 a.a.        Molecular weight: 127348.05 Da        Isoelectric Point: 5.4383

>NTDB_id=996205 AAFX13_RS22195 WP_005461251.1 2941819..2945205(+) (chiS) [Vibrio parahaemolyticus strain TBV028]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQILDYFEAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGNDIEEARENAQQRYIEGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDINGNVTYSINKDDNYGTNLLTGRYKDSALGKTFKRLADDVNERRKVNEDYTPVIISDFELEHGRQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIADKNRESSINTLLVGSDQQPRTINTKQDSIQNSLEVIDKALAGQTDVGTYTNGLGEE
IIAAFAPIQTRGITWALVVQLPEKEAFSRIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGVIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEIQATQTLVARGHFQIPEINLENGDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKAEMRHMENKVLESELRQRAVVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKYLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDRDQLQKLKELGGEFTRLADKALGNKKDKQDLMREVLVDAMTHA
LDYWESVTGESKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KLQRLLTS

Nucleotide


Download         Length: 3387 bp        

>NTDB_id=996205 AAFX13_RS22195 WP_005461251.1 2941819..2945205(+) (chiS) [Vibrio parahaemolyticus strain TBV028]
ATGTTTAAATTCTACAAAAAACAGAAATTTAAGCGCCTTCAGAGTACGCTGATGACTGCGTTTCTTGTCCTCAGCATTAC
GCCTCTTACCATCACTGCGATTTTTTTCCTGCAATCCCATAGTAAAGATCTGCAAGAACAGAGCACTTCACATCTGCTTT
CTGTTCGTGATACCAAACAACAACAGATCCTCGACTACTTCGAAGCGCAAGAAACCGAAGTCATGGGATTTGTACGCTCT
GAGCTCGCGTATGCCAGTGGTGGTCGTTTTTACGGCCTCGTCAATGCATTTAGCCGTTTAGGCAATGATATTGAAGAAGC
ACGTGAAAATGCTCAGCAACGTTATATCGAAGGCAGCGGTGACCAAATCAAAACATCGATTTTGCCGGAGTCCTCAAATT
ATGTCGGCAGTGAACGTTATCGCTTACTCCACAAACGTTATCACTGGGCATATCTGGAGCTACTCAAACGCTCAGATTTT
AATGATATTTTGCTGGTCGATATTAACGGCAACGTGACTTATTCCATCAACAAAGACGACAACTACGGTACTAACCTACT
AACGGGGCGCTACAAAGACTCGGCATTAGGTAAAACCTTTAAACGTCTAGCTGATGACGTCAACGAACGCCGCAAAGTGA
ATGAAGATTATACGCCCGTCATTATTTCTGATTTTGAACTGGAACATGGTCGACAAGTCGCTTGGCTTGGTGCACCTATC
GTTCAGCAAGGCTATTTGCACAGCTATGCTATGTTCCGTTTACCAAACAACGGCATTACCAAGCTGATCGCAGATAAGAA
CCGTGAATCGTCCATCAACACTCTACTGGTCGGCAGCGATCAGCAACCACGTACGATTAATACCAAGCAAGACAGTATTC
AAAACAGTCTTGAAGTCATCGATAAAGCTTTAGCGGGACAAACCGACGTTGGCACCTACACCAATGGACTTGGCGAAGAA
ATTATCGCTGCATTTGCCCCAATTCAAACACGCGGTATTACATGGGCGCTCGTGGTTCAACTTCCAGAAAAAGAGGCGTT
TTCACGCATTCATCAACTGGAAAAGCTCTTCGTTATCGCCATGCTAATCGCGATCATTCTTGTGGTGATTGCATCGCATT
ATTTGTCCAACTTCATTACATCACCACTGCTGAAGCTGACTTGGGCGGCGGAGAAAGTATCCGCTGGCGACCTCGACGAA
ACGACATTCAATACCGAACGTAAAGATGAAATCGGTCGCTTGGCTATCAGCTTCGAACGTATGCAGCGCTCGATTCGAGA
AAAAATCCAAACCATCAAACAGCAAAACGAAGAACTTGAAAGCAACATCAAGCTGATTCAGAAGCAAAATGATGAGTTGC
AACTGGCTGATAAACTGAAAGATGAGTTCCTCGCAACAACCTCGCACGAATTGCGTACACCGCTACATGGCATGGTTGGG
ATTGCAGAAACCCTCGTGTCAGGAGCAAATGGAGTCATTCCCGCCAGTCAAAAATACCAACTTGATATCATTATCAAGAG
TGGTCAACGCTTAGCTAACCTCGTAGACGATTTATTGGATTACCACAAAATGCGCTATGGCAGCATGGATATACAAAAAT
CGGCAGTAAGCTTAGCCAGTGCAACACGCTTGGTGCTTGAGCTTTCTAATCACCTGCTAGGCAATAAGACCATTCGCATC
ATCAACCAAGTACCCGCCGACCTTAAAGCCGTTTCGGCCGATCCGCAACGCCTCGAACAAGTGCTGTATAACTTGATTGG
CAATGCCATTAAATACACCTCAGAAGGTAAGATCGTCATTTCCGCTACCATTGTTGACGATCACGTCCGAGTGCAAGTGG
TCGATACTGGTCAGGGGATTCCAGCAGAACATCTTGAGCATATTTTTGAGCCTTTAATTCAAGCTGGCCAAGATGCAAGT
CGCTATCGTCAAGGTGCGGGACTGGGACTATCGATTAGCCGCCAACTGATTGAGTTGATGGGCGGTTCACTTTACGTGAG
CAGCCAGCCGATGGTCGGCACCACGTTTAGTTTCACACTGCCATTGGCCAGCGAAGAGGAAATCCAAGCAACTCAAACCT
TAGTGGCGCGTGGGCACTTCCAAATTCCTGAGATTAATTTGGAAAATGGCGACGACTTATCGCTACCCGAGAACCCTGAT
GGCCCACTGCTTTACGTCGCAGATGATGAACCCGTTAACTTGCGAGTACTGGAAAGCTTCTTACGCCTAGAAGGATACCG
CGTTCGTACCGTTTCAGATGGCCCAGAAACGCTGGCGCTGGTTGAACAAGAAAAGCCGGAACTGCTGTTACTCGACATTA
TGATGCCCGGCATGAGCGGCTACCAAGTATGTAGTGAACTACGTGAAACCTATGATCATGCTGAGCTACCTATCATTATG
CTCACCGCTCTCAGCCAAACAGAAGACCGTGTGAGAGGCTTTGAAGCAGGCGCGAATGACTACTTATCGAAGCCATTCAA
CAAACAAGAATTGGCGGCACGTATCCAAGCGCATTTAACAGCAAGTAAAGCGGAAATGCGCCATATGGAAAACAAAGTGC
TGGAGTCAGAGCTTAGACAGCGAGCTGTCGTCGAAGCAAGCCTTCTTGAAACTCAAGGTCGTTTGTTGGAACAGCTAGAA
TCTGCACCGGAAGCTATTATTTGTCTGCGAGAAGATCAGCGTATTCGTTTTGCCAACGAAGCGGCTTGTAAGCTATTCAA
ACGCAGTTTAGAGCAACTTAAACGCTCATCAGCTGACGAACTGATCGCACCAAAATATTTGACGGTGAAGCAGCCTCATT
ATTGCGGCAAGATTGATATCTACATCGAGGATATTCGTCAAAACATTGAAGCCGACATTCTAAAACTGCCAGAAGGCTCT
GGCTTAGATGTGATGTACATCTTTAATGTCGGTGGTGGAGCTAACGCCGCGCGTATTCATAACCTAGAAACTGCGGTAGA
AGTACTCTCAAGTTATGCATTCGATGGTGATAGAGACCAGTTGCAGAAACTCAAAGAGCTTGGTGGCGAGTTTACTCGTT
TGGCAGATAAGGCTTTGGGCAACAAAAAAGATAAGCAAGATTTGATGCGTGAAGTGTTGGTCGATGCCATGACGCATGCA
TTGGACTATTGGGAGTCTGTTACGGGTGAAAGTAAATTTGCGTTTGCCGAACAAAGTGGACTGTGGCGCGTCTACCTCGA
CCGAAGCACACTGCAAACCCGCACGCTCGATAAATACATGCGTATCGAAACTCTGCCTAAAACACCGCGCTGGAGAACGG
TTCTGAGTTCGATTGAGTTTATTCTTGAACACTGTAAAGAACAGAGCCCTGAACGTGCTTACATCGAAGCACAGCGCGAT
AAATTGCAAAGACTGCTCACTAGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(726-836)

HAMP domain (HAMP)

(375-427)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(574-683)

His Kinase A (phospho-acceptor) domain (HisKA)

(460-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

76.882

100

0.77

Multiple sequence alignment