Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AAFX13_RS15860 Genome accession   NZ_CP155084
Coordinates   1557281..1558702 (-) Length   473 a.a.
NCBI ID   WP_069533553.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TBV028     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1552281..1563702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX13_RS15835 (AAFX13_15830) - 1552845..1553495 (+) 651 WP_021822365.1 thiopurine S-methyltransferase -
  AAFX13_RS15840 (AAFX13_15835) purT 1553597..1554772 (-) 1176 WP_069533552.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  AAFX13_RS15845 (AAFX13_15840) cdd 1554920..1555807 (-) 888 WP_005486660.1 cytidine deaminase -
  AAFX13_RS15850 (AAFX13_15845) - 1556172..1556849 (-) 678 WP_005454891.1 LrgB family protein -
  AAFX13_RS15855 (AAFX13_15850) - 1556851..1557225 (-) 375 WP_005455074.1 CidA/LrgA family protein -
  AAFX13_RS15860 (AAFX13_15855) sbcB 1557281..1558702 (-) 1422 WP_069533553.1 exodeoxyribonuclease I Machinery gene
  AAFX13_RS15865 (AAFX13_15860) - 1558858..1560231 (-) 1374 WP_005486634.1 L-cystine transporter -
  AAFX13_RS15870 (AAFX13_15865) - 1560424..1561119 (-) 696 WP_069533554.1 NAD(P)H-binding protein -
  AAFX13_RS15875 (AAFX13_15870) cobT 1561803..1562846 (+) 1044 WP_005486734.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AAFX13_RS15880 (AAFX13_15875) - 1562891..1563643 (+) 753 WP_031792000.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54673.99 Da        Isoelectric Point: 4.9278

>NTDB_id=996202 AAFX13_RS15860 WP_069533553.1 1557281..1558702(-) (sbcB) [Vibrio parahaemolyticus strain TBV028]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIDLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=996202 AAFX13_RS15860 WP_069533553.1 1557281..1558702(-) (sbcB) [Vibrio parahaemolyticus strain TBV028]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGTCTATCCGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ATTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGA
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment