Detailed information NTG0996192

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AAFX13_RS10755
• Genome accession: NZ_CP155084
• Coordinates: 453295..454341 (-)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain TBV028
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 448295..459341

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFX13_RS10720 (AAFX13_10720)	-	448474..448905 (-)	432	WP_029864910.1	DUF2787 family protein	-
AAFX13_RS10725 (AAFX13_10725)	radC	448902..449375 (-)	474	WP_023624904.1	RadC family protein	-
AAFX13_RS10730 (AAFX13_10730)	-	449546..449695 (+)	150	WP_005489496.1	AlpA family phage regulatory protein	-
AAFX13_RS10735 (AAFX13_10735)	-	449855..450079 (+)	225	WP_029864913.1	hypothetical protein	-
AAFX13_RS10740 (AAFX13_10740)	hslU	450504..451835 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
AAFX13_RS10745 (AAFX13_10745)	hslV	451859..452410 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
AAFX13_RS10750 (AAFX13_10750)	ftsN	452574..453119 (-)	546	WP_005481405.1	cell division protein FtsN	-
AAFX13_RS10755 (AAFX13_10755)	cytR	453295..454341 (-)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
AAFX13_RS10760 (AAFX13_10760)	priA	454635..456839 (-)	2205	WP_411062582.1	primosomal protein N'	-
AAFX13_RS10765 (AAFX13_10765)	rpmE	457134..457355 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
AAFX13_RS10770 (AAFX13_10770)	rpsJ	457815..458126 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
AAFX13_RS10775 (AAFX13_10775)	rplC	458141..458770 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=996192 AAFX13_RS10755 WP_254894148.1 453295..454341(-) (cytR) [Vibrio parahaemolyticus strain TBV028]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=996192 AAFX13_RS10755 WP_254894148.1 453295..454341(-) (cytR) [Vibrio parahaemolyticus strain TBV028]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTT
AAAGGTCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871