Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABDD95_RS01470 Genome accession   NZ_CP155081
Coordinates   324745..326187 (-) Length   480 a.a.
NCBI ID   WP_345950131.1    Uniprot ID   A0AAU6Y0T5
Organism   Mucilaginibacter sp. PAMB04274     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 319745..331187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDD95_RS01460 (ABDD95_01465) - 322059..322529 (-) 471 WP_345950129.1 DUF4920 domain-containing protein -
  ABDD95_RS01465 (ABDD95_01470) - 322856..324205 (+) 1350 WP_345950130.1 NHL repeat-containing protein -
  ABDD95_RS01470 (ABDD95_01475) radA 324745..326187 (-) 1443 WP_345950131.1 DNA repair protein RadA Machinery gene
  ABDD95_RS01475 (ABDD95_01480) - 326354..327904 (-) 1551 WP_345950132.1 Rne/Rng family ribonuclease -
  ABDD95_RS01480 (ABDD95_01485) - 328029..328118 (-) 90 WP_008506795.1 hypothetical protein -
  ABDD95_RS01485 (ABDD95_01490) - 328143..329024 (-) 882 WP_345950133.1 hypothetical protein -
  ABDD95_RS01490 (ABDD95_01495) - 329028..329330 (-) 303 WP_345950134.1 HU family DNA-binding protein -
  ABDD95_RS01495 (ABDD95_01500) mutY 329508..330575 (+) 1068 WP_345950135.1 A/G-specific adenine glycosylase -
  ABDD95_RS01500 (ABDD95_01505) ssb 330582..331004 (+) 423 WP_345950136.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 52420.12 Da        Isoelectric Point: 7.1545

>NTDB_id=996172 ABDD95_RS01470 WP_345950131.1 324745..326187(-) (radA) [Mucilaginibacter sp. PAMB04274]
MAKTKSAYFCQSCGYESPKWLGKCPSCNQWNTFVEEVVEKPHAAASNWKSSNSAPGSGSTSLQRANKAVSVSNISFNEEH
RILTPDKELNRVLGGGIVAGSLILIGGEPGIGKSTLMLQLALSMPAAKVLYVSGEESDRQIKMRAERITPAQQYKAAEAG
MGCFILTETSTQNIFKQIEQLQPDLVIVDSIQTLYSAHIESTPGSVSQVRECTAELLRFAKESSTPVFLIGHITKDGMIA
GPKILEHMVDTVLQFEGDRHHVYRILRSIKNRFGSASELGIYEMLGAGLREVSNPSEILLSQRDEALSGITISATLEGLR
PMLIETQALVSTSAYGTPQRSATGFDTRRMNMLLAVLEKRCGFRLGTKDVFLNITGGIRVEDPAIDLGLAAAIISSHEDM
PISSKTCFAGELGLSGEIRAVNRIEQRIAEAQKLGFEQIFISKYNLPSGKKDKNQLDLSHYKIEIKAVSRIEEVFGLLFG

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=996172 ABDD95_RS01470 WP_345950131.1 324745..326187(-) (radA) [Mucilaginibacter sp. PAMB04274]
ATGGCTAAAACAAAATCAGCATATTTTTGCCAGAGCTGTGGCTATGAATCGCCTAAGTGGCTGGGTAAGTGCCCTTCATG
CAACCAATGGAATACGTTTGTAGAAGAAGTTGTAGAAAAACCACACGCAGCGGCATCTAACTGGAAAAGCAGCAATAGTG
CTCCTGGTTCGGGCTCAACTTCATTGCAGCGTGCCAACAAGGCGGTGTCGGTAAGCAACATCAGCTTCAATGAAGAGCAT
CGCATACTTACGCCCGATAAAGAATTGAACCGTGTATTGGGCGGCGGTATTGTGGCTGGCTCGCTTATACTAATTGGCGG
TGAACCCGGCATCGGCAAATCCACACTCATGCTGCAACTGGCTTTAAGCATGCCTGCAGCCAAGGTGCTTTATGTATCGG
GCGAAGAAAGTGACCGTCAGATTAAAATGCGGGCTGAAAGAATAACACCAGCCCAGCAATATAAGGCCGCAGAAGCAGGC
ATGGGCTGTTTTATCCTCACTGAAACCTCAACACAGAATATATTCAAACAGATTGAGCAGCTACAGCCCGACCTGGTAAT
TGTAGACTCCATCCAAACGCTATACTCGGCGCATATCGAATCTACGCCAGGTAGCGTGTCACAGGTTCGAGAGTGTACAG
CAGAGCTGCTTCGCTTTGCTAAGGAGAGCTCTACGCCCGTATTCCTGATTGGACATATTACCAAGGACGGCATGATTGCA
GGGCCTAAAATACTGGAACATATGGTAGATACCGTATTGCAGTTTGAAGGCGACAGGCACCACGTTTACCGCATCCTGCG
GTCTATAAAGAACCGTTTTGGGTCGGCGTCCGAGCTGGGTATTTACGAAATGCTTGGAGCTGGTTTGCGCGAGGTGTCTA
ACCCATCGGAAATCTTACTATCACAGCGGGATGAAGCTTTAAGCGGCATAACCATCAGCGCTACATTAGAGGGCTTGCGG
CCCATGTTGATTGAAACGCAGGCACTGGTGAGCACGTCGGCTTACGGAACACCTCAACGTTCGGCTACGGGCTTTGATAC
GAGACGGATGAACATGCTGTTAGCCGTGCTGGAGAAACGCTGTGGCTTCAGGCTGGGCACTAAAGACGTTTTCCTGAACA
TTACGGGTGGCATACGGGTTGAGGACCCCGCTATTGACCTTGGCTTGGCTGCGGCTATTATTTCCTCGCACGAGGATATG
CCCATTTCATCCAAAACATGCTTTGCAGGCGAGTTAGGCCTATCGGGCGAAATAAGGGCCGTTAACCGTATTGAGCAGCG
TATTGCCGAAGCCCAAAAGCTTGGGTTTGAGCAAATTTTTATTTCCAAGTACAATTTACCCTCGGGTAAAAAAGACAAGA
ATCAGTTGGATCTGTCGCACTACAAAATTGAGATCAAAGCGGTAAGCCGTATAGAGGAAGTGTTCGGCCTGTTGTTTGGA
TAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(356-445)

AAA domain (AAA_25)

(78-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

100

0.5
  radA Streptococcus mitis NCTC 12261

46.667

100

0.467
  radA Streptococcus pneumoniae Rx1

46.667

100

0.467
  radA Streptococcus pneumoniae D39

46.667

100

0.467
  radA Streptococcus pneumoniae R6

46.667

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.667

100

0.467
  radA Streptococcus mitis SK321

46.458

100

0.465

Multiple sequence alignment