Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AAGS40_RS01640 | Genome accession | NZ_CP155073 |
| Coordinates | 363679..364824 (-) | Length | 381 a.a. |
| NCBI ID | WP_345812778.1 | Uniprot ID | - |
| Organism | Paraburkholderia sp. PREW-6R | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 358679..369824
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAGS40_RS01615 (AAGS40_01615) | - | 359811..360374 (+) | 564 | WP_345812773.1 | acyloxyacyl hydrolase | - |
| AAGS40_RS01620 (AAGS40_01620) | - | 360418..360801 (+) | 384 | WP_345812774.1 | nuclear transport factor 2 family protein | - |
| AAGS40_RS01625 (AAGS40_01625) | ybiB | 360949..361920 (-) | 972 | WP_345812775.1 | DNA-binding protein YbiB | - |
| AAGS40_RS01630 (AAGS40_01630) | - | 362170..362868 (+) | 699 | WP_345812776.1 | fumarylacetoacetate hydrolase family protein | - |
| AAGS40_RS01635 (AAGS40_01635) | maiA | 362892..363536 (+) | 645 | WP_345812777.1 | maleylacetoacetate isomerase | - |
| AAGS40_RS01640 (AAGS40_01640) | pilA | 363679..364824 (-) | 1146 | WP_345812778.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| AAGS40_RS01645 (AAGS40_01645) | rsmD | 365087..365710 (+) | 624 | WP_345812779.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| AAGS40_RS01650 (AAGS40_01650) | coaD | 365821..366333 (+) | 513 | WP_345812780.1 | pantetheine-phosphate adenylyltransferase | - |
| AAGS40_RS01655 (AAGS40_01655) | - | 366397..366654 (+) | 258 | WP_345812781.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| AAGS40_RS01660 (AAGS40_01660) | hisC | 366750..367829 (-) | 1080 | WP_345812782.1 | histidinol-phosphate transaminase | - |
| AAGS40_RS01665 (AAGS40_01665) | pth | 367897..368499 (-) | 603 | WP_345812783.1 | aminoacyl-tRNA hydrolase | - |
| AAGS40_RS01670 (AAGS40_01670) | - | 368660..369280 (-) | 621 | WP_345812784.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
Sequence
Protein
Download Length: 381 a.a. Molecular weight: 40758.60 Da Isoelectric Point: 4.7655
>NTDB_id=996116 AAGS40_RS01640 WP_345812778.1 363679..364824(-) (pilA) [Paraburkholderia sp. PREW-6R]
MFSFFKRFKGSKESDNAPDESPSASDDLTPDSFEDPRVVPAVSQAPAADFPHPVAAPVEPEAGIEAEESIEIVPPPQQDA
GTKRSWLTRLKTGLSKTSSSLTGIFVGTKIDEDLYEELETALLMSDAGIDATEFLLESLREKVRTERLTEPQQVKAALRA
LLIELLKPLEKSLMLGHAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVS
QESGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAMDGAPHEVLLVIDANTGQNALAQVKAF
DDALGLTGLVVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGG
MFSFFKRFKGSKESDNAPDESPSASDDLTPDSFEDPRVVPAVSQAPAADFPHPVAAPVEPEAGIEAEESIEIVPPPQQDA
GTKRSWLTRLKTGLSKTSSSLTGIFVGTKIDEDLYEELETALLMSDAGIDATEFLLESLREKVRTERLTEPQQVKAALRA
LLIELLKPLEKSLMLGHAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVS
QESGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAMDGAPHEVLLVIDANTGQNALAQVKAF
DDALGLTGLVVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGG
Nucleotide
Download Length: 1146 bp
>NTDB_id=996116 AAGS40_RS01640 WP_345812778.1 363679..364824(-) (pilA) [Paraburkholderia sp. PREW-6R]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATAACGCGCCGGACGAATCGCCGTCGGCGTCAGACGA
CCTGACACCGGACAGTTTTGAAGACCCGCGAGTCGTACCTGCCGTGTCACAGGCACCTGCGGCCGACTTTCCGCACCCGG
TCGCGGCGCCGGTCGAGCCGGAAGCCGGGATCGAAGCCGAAGAGTCCATTGAGATCGTTCCGCCTCCGCAGCAGGACGCC
GGCACGAAACGCTCGTGGCTCACGCGCCTGAAAACGGGATTGTCGAAGACAAGTTCGAGCCTGACCGGCATCTTCGTCGG
CACGAAGATCGACGAAGATCTTTACGAAGAACTCGAAACCGCGCTGCTGATGTCGGACGCGGGTATCGACGCCACCGAAT
TCCTGCTCGAATCCTTGCGTGAGAAAGTGCGCACCGAGCGCCTCACCGAGCCGCAACAGGTGAAGGCCGCGCTGCGCGCA
CTGTTGATCGAGTTGCTCAAGCCGCTCGAAAAATCGCTGATGCTCGGCCACGCGCAGCCGCTCGTGATGATGATCGCGGG
CGTGAACGGCGCAGGTAAAACCACCAGCATCGGCAAGCTTGCCAAGCATCTGCAAAGTTTCAATCAGTCCGTGCTGCTGG
CAGCGGGCGACACGTTCCGCGCGGCCGCTCGCGAGCAGCTTGCGATCTGGGGTCAGCGCAACAACGTGACGGTGGTGTCG
CAGGAAAGTGGCGACCCGGCAGCGGTGATTTTCGACGCGGTCGGCGCGGCGCGCGCCCGCAAGATCGACGTGATGATGGC
CGATACGGCCGGCCGTCTGCCAACCCAGTTGCATCTGATGGAAGAGCTGCGCAAGGTCAAACGCGTGATTGGCAAGGCAA
TGGACGGCGCGCCGCACGAAGTGCTGCTCGTCATCGACGCGAATACCGGCCAGAACGCGCTCGCGCAGGTCAAAGCATTC
GACGACGCGCTCGGCCTCACCGGTCTGGTCGTCACCAAGCTCGACGGCACGGCGAAAGGCGGCATTCTCGCCGCGATCGC
ACGCCAGCGCCCTATCCCGGTGTACTTCATCGGCGTTGGCGAGAAGGTGGAAGATTTGCAGCCGTTCAGCGCCGAAGAGT
TTTCGGACGCGTTGCTGGGCGGTTGA
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATAACGCGCCGGACGAATCGCCGTCGGCGTCAGACGA
CCTGACACCGGACAGTTTTGAAGACCCGCGAGTCGTACCTGCCGTGTCACAGGCACCTGCGGCCGACTTTCCGCACCCGG
TCGCGGCGCCGGTCGAGCCGGAAGCCGGGATCGAAGCCGAAGAGTCCATTGAGATCGTTCCGCCTCCGCAGCAGGACGCC
GGCACGAAACGCTCGTGGCTCACGCGCCTGAAAACGGGATTGTCGAAGACAAGTTCGAGCCTGACCGGCATCTTCGTCGG
CACGAAGATCGACGAAGATCTTTACGAAGAACTCGAAACCGCGCTGCTGATGTCGGACGCGGGTATCGACGCCACCGAAT
TCCTGCTCGAATCCTTGCGTGAGAAAGTGCGCACCGAGCGCCTCACCGAGCCGCAACAGGTGAAGGCCGCGCTGCGCGCA
CTGTTGATCGAGTTGCTCAAGCCGCTCGAAAAATCGCTGATGCTCGGCCACGCGCAGCCGCTCGTGATGATGATCGCGGG
CGTGAACGGCGCAGGTAAAACCACCAGCATCGGCAAGCTTGCCAAGCATCTGCAAAGTTTCAATCAGTCCGTGCTGCTGG
CAGCGGGCGACACGTTCCGCGCGGCCGCTCGCGAGCAGCTTGCGATCTGGGGTCAGCGCAACAACGTGACGGTGGTGTCG
CAGGAAAGTGGCGACCCGGCAGCGGTGATTTTCGACGCGGTCGGCGCGGCGCGCGCCCGCAAGATCGACGTGATGATGGC
CGATACGGCCGGCCGTCTGCCAACCCAGTTGCATCTGATGGAAGAGCTGCGCAAGGTCAAACGCGTGATTGGCAAGGCAA
TGGACGGCGCGCCGCACGAAGTGCTGCTCGTCATCGACGCGAATACCGGCCAGAACGCGCTCGCGCAGGTCAAAGCATTC
GACGACGCGCTCGGCCTCACCGGTCTGGTCGTCACCAAGCTCGACGGCACGGCGAAAGGCGGCATTCTCGCCGCGATCGC
ACGCCAGCGCCCTATCCCGGTGTACTTCATCGGCGTTGGCGAGAAGGTGGAAGATTTGCAGCCGTTCAGCGCCGAAGAGT
TTTCGGACGCGTTGCTGGGCGGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
63.576 |
79.265 |
0.504 |