Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QMM94_RS07590 Genome accession   NZ_AP027134
Coordinates   1587929..1588333 (-) Length   134 a.a.
NCBI ID   WP_209205909.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP008     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1582929..1593333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM94_RS07560 (JP008_14740) gcvPA 1583855..1585201 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QMM94_RS07565 (JP008_14750) gcvT 1585221..1586312 (-) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  QMM94_RS07570 (JP008_14760) - 1586471..1586995 (-) 525 WP_001015122.1 shikimate kinase -
  QMM94_RS07575 - 1586985..1587131 (-) 147 WP_001789879.1 hypothetical protein -
  QMM94_RS07580 (JP008_14780) comGF 1587228..1587725 (-) 498 WP_154284346.1 competence type IV pilus minor pilin ComGF Machinery gene
  QMM94_RS07585 (JP008_14790) comGE 1587643..1587942 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QMM94_RS07590 (JP008_14800) comGD 1587929..1588333 (-) 405 WP_209205909.1 competence type IV pilus minor pilin ComGD Machinery gene
  QMM94_RS07595 (JP008_14810) comGC 1588353..1588664 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QMM94_RS07600 (JP008_14820) comGB 1588678..1589748 (-) 1071 Protein_1492 competence type IV pilus assembly protein ComGB -
  QMM94_RS07605 (JP008_14830) comGA 1589720..1590694 (-) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  QMM94_RS07610 (JP008_14840) - 1590746..1591369 (-) 624 WP_267815017.1 MBL fold metallo-hydrolase -
  QMM94_RS07615 (JP008_14850) - 1591366..1591695 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QMM94_RS07620 (JP008_14860) - 1591695..1592681 (-) 987 WP_000161315.1 ROK family glucokinase -
  QMM94_RS07625 (JP008_14870) - 1592678..1592881 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15437.31 Da        Isoelectric Point: 10.1437

>NTDB_id=99604 QMM94_RS07590 WP_209205909.1 1587929..1588333(-) (comGD) [Staphylococcus aureus strain JP008]
MIEILVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSDTIKVIENNKIRFLK
LKVGKIINVAKVDIIAFDKKGNINKFGSITIENNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=99604 QMM94_RS07590 WP_209205909.1 1587929..1588333(-) (comGD) [Staphylococcus aureus strain JP008]
ATGATTGAGATACTTGTGGTAATGATGTTAATCAGTATATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCT
TAGAGTAATAGATGACGAGGCAAATATCATTTCTCTTATTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATC
AAGGATATATCAATGTTAGATTTTATGAAAACAGTGACACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAA
TTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGATATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGG
TAGCATAACAATTGAGAATAACAATTCAATTTATAGAATAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGC
TATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

97.761

100

0.978
  comGD Staphylococcus aureus N315

97.761

100

0.978

Multiple sequence alignment