Detailed information NTG0996028

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EW036_RS06070
• Genome accession: NZ_LR130545
• Coordinates: 1243596..1244588 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain B36 isolate B36
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1238596..1249588

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EW036_RS06040	ispD	1238657..1239367 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EW036_RS06045	ispF	1239367..1239846 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EW036_RS06050	truD	1239843..1240892 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
EW036_RS06055	surE	1240873..1241634 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EW036_RS06060	pcm	1241628..1242254 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EW036_RS06065	nlpD	1242439..1243533 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
EW036_RS06070	rpoS	1243596..1244588 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EW036_RS06075	-	1244759..1245310 (-)	552	WP_001179444.1	flavodoxin family protein	-
EW036_RS06080	-	1245535..1246578 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
EW036_RS06085	ygbN	1246721..1248085 (-)	1365	WP_000104433.1	GntP family transporter	-
EW036_RS06090	ygbM	1248174..1248950 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=996028 EW036_RS06070 WP_000081550.1 1243596..1244588(+) (rpoS) [Escherichia coli strain B36 isolate B36]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=996028 EW036_RS06070 WP_000081550.1 1243596..1244588(+) (rpoS) [Escherichia coli strain B36 isolate B36]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715