Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ABC964_RS07830 Genome accession   NZ_CP155060
Coordinates   1617092..1617538 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC5-MSSA     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1612092..1622538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC964_RS07800 (ABC964_07800) gcvPA 1613010..1614356 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ABC964_RS07805 (ABC964_07805) gcvT 1614376..1615467 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  ABC964_RS07810 (ABC964_07810) - 1615626..1616150 (-) 525 WP_001015120.1 shikimate kinase -
  ABC964_RS07815 (ABC964_07815) - 1616140..1616286 (-) 147 WP_001792109.1 hypothetical protein -
  ABC964_RS07820 (ABC964_07820) comGF 1616383..1616880 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABC964_RS07825 (ABC964_07825) - 1616798..1617105 (-) 308 Protein_1536 competence protein ComGE -
  ABC964_RS07830 (ABC964_07830) comGD 1617092..1617538 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABC964_RS07835 (ABC964_07835) comGC 1617516..1617827 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ABC964_RS07840 (ABC964_07840) comGB 1617841..1618911 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABC964_RS07845 (ABC964_07845) comGA 1618883..1619857 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  ABC964_RS07850 (ABC964_07850) - 1619909..1620532 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ABC964_RS07855 (ABC964_07855) - 1620529..1620858 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ABC964_RS07860 (ABC964_07860) - 1620858..1621844 (-) 987 WP_000161311.1 ROK family glucokinase -
  ABC964_RS07865 (ABC964_07865) - 1621841..1622044 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=995964 ABC964_RS07830 WP_001788899.1 1617092..1617538(-) (comGD) [Staphylococcus aureus strain CC5-MSSA]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=995964 ABC964_RS07830 WP_001788899.1 1617092..1617538(-) (comGD) [Staphylococcus aureus strain CC5-MSSA]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment