Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ABC967_RS10000 Genome accession   NZ_CP155059
Coordinates   2022293..2023009 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain CC133-MSSA     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2017293..2028009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC967_RS09970 (ABC967_09970) - 2017541..2018167 (+) 627 WP_000522380.1 nitroreductase family protein -
  ABC967_RS09975 (ABC967_09975) - 2018496..2019281 (+) 786 WP_000867953.1 carbon-nitrogen family hydrolase -
  ABC967_RS09980 (ABC967_09980) hld 2019880..2019960 (-) 81 WP_000046023.1 delta-hemolysin -
  ABC967_RS09985 (ABC967_09985) agrB 2020251..2020820 (+) 570 WP_109183312.1 accessory gene regulator AgrB -
  ABC967_RS09990 (ABC967_09990) - 2020817..2020957 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  ABC967_RS09995 (ABC967_09995) - 2020982..2022274 (+) 1293 WP_031844950.1 GHKL domain-containing protein -
  ABC967_RS10000 (ABC967_10000) agrA 2022293..2023009 (+) 717 WP_000688492.1 LytTR family DNA-binding domain-containing protein Regulator
  ABC967_RS10005 (ABC967_10005) - 2023081..2023188 (+) 108 WP_041204320.1 hypothetical protein -
  ABC967_RS10010 (ABC967_10010) - 2023376..2024335 (-) 960 WP_001253306.1 carbohydrate kinase -
  ABC967_RS10015 (ABC967_10015) - 2024332..2025816 (-) 1485 WP_000141421.1 glycoside hydrolase family 32 protein -
  ABC967_RS10020 (ABC967_10020) - 2025965..2026915 (-) 951 WP_000790321.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=995939 ABC967_RS10000 WP_000688492.1 2022293..2023009(+) (agrA) [Staphylococcus aureus strain CC133-MSSA]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=995939 ABC967_RS10000 WP_000688492.1 2022293..2023009(+) (agrA) [Staphylococcus aureus strain CC133-MSSA]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCC
GTTGGTAACATTATATTTGTTACGAGTCACAGTGAACTTACCTATTTAACTTTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment