Detailed information    

insolico Bioinformatically predicted

Overview


Name   nin/comJ   Type   Regulator
Locus tag   AAHT64_RS18595 Genome accession   NZ_CP155054
Coordinates   3608983..3609381 (+) Length   132 a.a.
NCBI ID   WP_003246342.1    Uniprot ID   A0AAE2SGH7
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context


Location: 3603983..3614381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS18570 (AAHT64_18570) hxlR 3604717..3605079 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  AAHT64_RS18575 (AAHT64_18575) hxlA 3605312..3605944 (+) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  AAHT64_RS18580 (AAHT64_18580) hxlB 3605950..3606507 (+) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  AAHT64_RS18585 (AAHT64_18585) tlpC 3606618..3608339 (+) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  AAHT64_RS18590 (AAHT64_18590) nucA/comI 3608507..3608956 (+) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  AAHT64_RS18595 (AAHT64_18595) nin/comJ 3608983..3609381 (+) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  AAHT64_RS18600 (AAHT64_18600) bglC 3609418..3610851 (-) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  AAHT64_RS18605 (AAHT64_18605) yckD 3611005..3611337 (-) 333 WP_003246247.1 YckD family protein -
  AAHT64_RS18610 (AAHT64_18610) - 3611419..3611739 (-) 321 Protein_3653 RDD family protein -
  AAHT64_RS18615 (AAHT64_18615) - 3611776..3611973 (-) 198 Protein_3654 hypothetical protein -
  AAHT64_RS18620 (AAHT64_18620) yckB 3612135..3612998 (+) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  AAHT64_RS18625 (AAHT64_18625) yckA 3613008..3613688 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence


Protein


Download         Length: 132 a.a.        Molecular weight: 14996.95 Da        Isoelectric Point: 4.8991

>NTDB_id=995888 AAHT64_RS18595 WP_003246342.1 3608983..3609381(+) (nin/comJ) [Bacillus subtilis subsp. subtilis strain R38]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=995888 AAHT64_RS18595 WP_003246342.1 3608983..3609381(+) (nin/comJ) [Bacillus subtilis subsp. subtilis strain R38]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTTCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains


Predicted by InterproScan.

(9-129)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

100

100

1


Multiple sequence alignment