Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AAHT64_RS14750 Genome accession   NZ_CP155054
Coordinates   2857872..2858450 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2852872..2863450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS14715 (AAHT64_14715) lepB 2852878..2853384 (-) 507 WP_003233128.1 signal peptidase I -
  AAHT64_RS14720 (AAHT64_14720) yhjE 2853386..2854009 (-) 624 WP_010886465.1 VTT domain-containing protein -
  AAHT64_RS14725 (AAHT64_14725) - 2854161..2854523 (+) 363 WP_003233132.1 hypothetical protein -
  AAHT64_RS14730 (AAHT64_14730) yhjC 2854731..2854931 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  AAHT64_RS14735 (AAHT64_14735) yhjB 2854928..2856397 (+) 1470 WP_003233134.1 sodium:solute symporter -
  AAHT64_RS14740 (AAHT64_14740) yhjA 2856440..2856709 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  AAHT64_RS14745 (AAHT64_14745) yhxD 2856926..2857825 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  AAHT64_RS14750 (AAHT64_14750) comK 2857872..2858450 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  AAHT64_RS14755 (AAHT64_14755) yhzC 2858743..2858976 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  AAHT64_RS14760 (AAHT64_14760) yhxC 2859004..2859861 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  AAHT64_RS14765 (AAHT64_14765) yhfW 2859973..2861502 (+) 1530 WP_032730444.1 FAD-dependent oxidoreductase -
  AAHT64_RS14770 (AAHT64_14770) hemAT 2861641..2862939 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=995871 AAHT64_RS14750 WP_003245329.1 2857872..2858450(-) (comK) [Bacillus subtilis subsp. subtilis strain R38]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=995871 AAHT64_RS14750 WP_003245329.1 2857872..2858450(-) (comK) [Bacillus subtilis subsp. subtilis strain R38]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment