Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AAHT64_RS12780 Genome accession   NZ_CP155054
Coordinates   2498558..2499022 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2493558..2504022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS12760 (AAHT64_12760) fadH 2494746..2495510 (-) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -
  AAHT64_RS12765 (AAHT64_12765) ppeE 2495653..2496513 (+) 861 WP_003232400.1 metallophosphoesterase -
  AAHT64_RS12770 (AAHT64_12770) ltdD 2496570..2497064 (+) 495 WP_010886500.1 L,D-transpeptidase family protein -
  AAHT64_RS12775 (AAHT64_12775) ykuC 2497140..2498432 (+) 1293 WP_003245267.1 MFS transporter -
  AAHT64_RS12780 (AAHT64_12780) kre 2498558..2499022 (+) 465 WP_003232406.1 YkyB family protein Regulator
  AAHT64_RS12785 (AAHT64_12785) cheV 2499066..2499977 (-) 912 WP_009967126.1 chemotaxis protein CheV -
  AAHT64_RS12790 (AAHT64_12790) - 2500181..2500342 (+) 162 WP_003245246.1 hypothetical protein -
  AAHT64_RS12795 (AAHT64_12795) dapX 2500544..2501725 (+) 1182 WP_003232415.1 aminotransferase A -
  AAHT64_RS12800 (AAHT64_12800) kinA 2501736..2503556 (-) 1821 WP_003245779.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=995859 AAHT64_RS12780 WP_003232406.1 2498558..2499022(+) (kre) [Bacillus subtilis subsp. subtilis strain R38]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=995859 AAHT64_RS12780 WP_003232406.1 2498558..2499022(+) (kre) [Bacillus subtilis subsp. subtilis strain R38]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTATCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment