Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AAHT64_RS12545 Genome accession   NZ_CP155054
Coordinates   2455439..2455717 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2450439..2460717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS12525 (AAHT64_12525) ade 2450503..2452236 (-) 1734 WP_032721495.1 adenine deaminase -
  AAHT64_RS12530 (AAHT64_12530) ktrC 2452392..2453057 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  AAHT64_RS12535 (AAHT64_12535) ykqA 2453120..2453947 (-) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  AAHT64_RS12540 (AAHT64_12540) kinC 2453963..2455249 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  AAHT64_RS12545 (AAHT64_12545) abrB 2455439..2455717 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  AAHT64_RS12550 (AAHT64_12550) mreBH 2456001..2457008 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  AAHT64_RS12555 (AAHT64_12555) ykpC 2457109..2457243 (+) 135 WP_003238865.1 protein YkpC -
  AAHT64_RS12560 (AAHT64_12560) ampS 2457353..2458585 (+) 1233 WP_003232341.1 aminopeptidase -
  AAHT64_RS12565 (AAHT64_12565) - 2458619..2459530 (-) 912 WP_003245639.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=995857 AAHT64_RS12545 WP_003244728.1 2455439..2455717(-) (abrB) [Bacillus subtilis subsp. subtilis strain R38]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=995857 AAHT64_RS12545 WP_003244728.1 2455439..2455717(-) (abrB) [Bacillus subtilis subsp. subtilis strain R38]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment