Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAHT64_RS09340 Genome accession   NZ_CP155054
Coordinates   1766588..1767208 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1761588..1772208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS09320 (AAHT64_09320) dnaD 1761879..1762577 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  AAHT64_RS09325 (AAHT64_09325) nth 1762596..1763255 (+) 660 WP_009967580.1 endonuclease III -
  AAHT64_RS09330 (AAHT64_09330) ypoC 1763252..1763746 (+) 495 WP_009967579.1 YpoC family protein -
  AAHT64_RS09335 (AAHT64_09335) ponA 1763822..1766566 (-) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  AAHT64_RS09340 (AAHT64_09340) recU 1766588..1767208 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  AAHT64_RS09345 (AAHT64_09345) yppC 1767249..1768211 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  AAHT64_RS09350 (AAHT64_09350) sspM 1768236..1768340 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AAHT64_RS09355 (AAHT64_09355) yppD 1768539..1768784 (+) 246 WP_004398488.1 YppD family protein -
  AAHT64_RS09360 (AAHT64_09360) yppE 1768830..1769201 (+) 372 WP_003246080.1 YppE family protein -
  AAHT64_RS09365 (AAHT64_09365) yppF 1769240..1769428 (-) 189 WP_003230690.1 YppF family protein -
  AAHT64_RS09370 (AAHT64_09370) yppG 1769616..1769993 (+) 378 WP_004398696.1 YppG family protein -
  AAHT64_RS09375 (AAHT64_09375) ypqA 1770014..1770433 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  AAHT64_RS09380 (AAHT64_09380) ypqE 1770571..1771077 (+) 507 WP_009967573.1 glucose PTS transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=995852 AAHT64_RS09340 WP_004399067.1 1766588..1767208(-) (recU) [Bacillus subtilis subsp. subtilis strain R38]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=995852 AAHT64_RS09340 WP_004399067.1 1766588..1767208(-) (recU) [Bacillus subtilis subsp. subtilis strain R38]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment