Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AAHT64_RS08355 Genome accession   NZ_CP155054
Coordinates   1589162..1589965 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1584162..1594965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS08335 (AAHT64_08335) yqxC 1584272..1585117 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  AAHT64_RS08340 (AAHT64_08340) argR 1585215..1585664 (+) 450 WP_003230265.1 arginine repressor ArgR -
  AAHT64_RS08345 (AAHT64_08345) recN 1585701..1587431 (+) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  AAHT64_RS08350 (AAHT64_08350) spoIVB 1587606..1588886 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  AAHT64_RS08355 (AAHT64_08355) spo0A 1589162..1589965 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  AAHT64_RS08360 (AAHT64_08360) yqiG 1590430..1591548 (-) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  AAHT64_RS08365 (AAHT64_08365) - 1591621..1591773 (-) 153 WP_003230276.1 hypothetical protein -
  AAHT64_RS08370 (AAHT64_08370) yqiH 1592081..1592374 (+) 294 WP_003230284.1 lipoprotein -
  AAHT64_RS08375 (AAHT64_08375) yqiI 1592389..1593009 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  AAHT64_RS08380 (AAHT64_08380) glpQ 1593088..1593819 (+) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=995851 AAHT64_RS08355 WP_003226427.1 1589162..1589965(+) (spo0A) [Bacillus subtilis subsp. subtilis strain R38]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=995851 AAHT64_RS08355 WP_003226427.1 1589162..1589965(+) (spo0A) [Bacillus subtilis subsp. subtilis strain R38]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment