Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AAHT64_RS02345 Genome accession   NZ_CP155054
Coordinates   462712..463401 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 457712..468401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS02325 (AAHT64_02325) tagO 458278..459354 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  AAHT64_RS02330 (AAHT64_02330) tagV 459427..460602 (-) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  AAHT64_RS02335 (AAHT64_02335) yvyE 460602..461255 (-) 654 WP_003227979.1 YigZ family protein -
  AAHT64_RS02340 (AAHT64_02340) degS 461472..462629 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AAHT64_RS02345 (AAHT64_02345) degU 462712..463401 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAHT64_RS02350 (AAHT64_02350) fakBA 463499..464344 (+) 846 WP_003244125.1 DegV family protein -
  AAHT64_RS02355 (AAHT64_02355) comFA 464450..465841 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  AAHT64_RS02360 (AAHT64_02360) comFB 465901..466197 (+) 297 WP_003227989.1 late competence protein ComFB -
  AAHT64_RS02365 (AAHT64_02365) comFC 466161..466883 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  AAHT64_RS02370 (AAHT64_02370) yvyF 466957..467376 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AAHT64_RS02375 (AAHT64_02375) flgM 467457..467723 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAHT64_RS02380 (AAHT64_02380) flgN 467739..468221 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=995820 AAHT64_RS02345 WP_003219701.1 462712..463401(+) (degU) [Bacillus subtilis subsp. subtilis strain R38]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=995820 AAHT64_RS02345 WP_003219701.1 462712..463401(+) (degU) [Bacillus subtilis subsp. subtilis strain R38]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment