Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   M9Y83_RS10610 Genome accession   NZ_CP155048
Coordinates   2206748..2209495 (+) Length   915 a.a.
NCBI ID   WP_128661514.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CCBH26428     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2201748..2214495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9Y83_RS10590 (M9Y83_0010590) - 2202383..2203144 (+) 762 WP_003091396.1 class I SAM-dependent methyltransferase -
  M9Y83_RS10595 (M9Y83_0010595) leuB 2203203..2204285 (+) 1083 WP_128661513.1 3-isopropylmalate dehydrogenase -
  M9Y83_RS10600 (M9Y83_0010600) asd 2204355..2205467 (+) 1113 WP_003111187.1 aspartate-semialdehyde dehydrogenase -
  M9Y83_RS10605 (M9Y83_0010605) - 2205569..2206579 (+) 1011 WP_003115016.1 aspartate-semialdehyde dehydrogenase -
  M9Y83_RS10610 (M9Y83_0010610) fimV 2206748..2209495 (+) 2748 WP_128661514.1 motility hub landmark protein FimV Machinery gene
  M9Y83_RS10615 (M9Y83_0010615) truA 2209517..2210374 (+) 858 WP_003091390.1 tRNA pseudouridine(38-40) synthase TruA -
  M9Y83_RS10620 (M9Y83_0010620) - 2210464..2211099 (+) 636 WP_003091389.1 phosphoribosylanthranilate isomerase -
  M9Y83_RS10625 (M9Y83_0010625) accD 2211368..2212240 (+) 873 WP_003104199.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  M9Y83_RS10630 (M9Y83_0010630) folC 2212237..2213526 (+) 1290 WP_009313773.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  M9Y83_RS10635 (M9Y83_0010635) - 2213530..2214177 (+) 648 WP_023095368.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 915 a.a.        Molecular weight: 96509.69 Da        Isoelectric Point: 3.9636

>NTDB_id=995790 M9Y83_RS10610 WP_128661514.1 2206748..2209495(+) (fimV) [Pseudomonas aeruginosa strain CCBH26428]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGTAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVLLMIL
SRRNAQKEKEEAQAFAADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAAAPQVEKTTAQTSDALGEADIYIAYGRFNQAA
ELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELD
SFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGSDDVQADLKSDSGALDDLTLDSDLDLAASTAADKPVDDLDFGL
DFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSLADEP
TEPAAPEKGEDSFAAQLDEVSAQLDKLASNLDEPKSAAPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLARAYI
DMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2748 bp        

>NTDB_id=995790 M9Y83_RS10610 WP_128661514.1 2206748..2209495(+) (fimV) [Pseudomonas aeruginosa strain CCBH26428]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCGCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGTAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTTGCGTTCCAGGAACTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCTCCATCCAAGGTCGATGCCACGGACAACCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGGGCCGACAAGGGCGGGAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGATAGCACTCGCCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGATCTGCAGAGCCAGCT
GGACAAGCTGCAGAAGTTGATCCAGCTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCACAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCAGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCCGCTGCGGCAGCACCGACTCCTGCTCCGGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAACCTCCGGCACCTGCCGCTCCGGTTCAGGCGGCAGAGCAGCCGGCACCGAGCTTCCTCGACG
AACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTGCTGATGATCCTG
TCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATGCCGGCGAGGAACAGGAGGATGCGCT
GGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAACCGCAGGTCGCAGCCGCTGCGCCGCAGGTCG
AGAAGACCACTGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTCAACCAGGCCGCC
GAACTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGAT
GGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGGTCGAGCAGCTCA
AGTCGCGCTACCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAGGACGAGCTGGAT
AGTTTCAGCCTCGACGATCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACAGGATCTCGACGA
CGCCTTCGACCTGAGCCTGGACGACCTGGGCAGCGACGACGTGCAGGCCGATCTCAAGTCCGACAGCGGGGCGCTGGACG
ACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTCGACCGCGGCGGACAAGCCTGTCGACGATCTCGACTTCGGCCTG
GATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGACGACCTGGGCGATTTCTCCCTGGATCTCGATGCGCC
GGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAGGTGCCCGCCGCGGCGCCAGCCGACAACGAAT
TCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTGGCCGACGAGCCG
ACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACAAGTT
GGCCAGCAACCTTGACGAGCCGAAGAGCGCGGCGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCTCCGCCCTGGACG
GAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCTCGCGCCTACATC
GACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCAGCAGGCGGAAGC
CCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

98.694

100

0.991

Multiple sequence alignment