Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   EJN52_RS02200 Genome accession   NZ_LR130535
Coordinates   453588..453953 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa isolate paerg011     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448588..458953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN52_RS02170 (BANRA_00417) pyrR 449210..449722 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  EJN52_RS02175 (BANRA_00418) ruvX 449834..450268 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  EJN52_RS02180 (BANRA_00419) - 450268..450837 (-) 570 WP_070870543.1 YqgE/AlgH family protein -
  EJN52_RS02185 (BANRA_00420) - 450886..451779 (-) 894 WP_003160914.1 energy transducer TonB -
  EJN52_RS02190 (BANRA_00421) gshB 451926..452879 (-) 954 WP_003100943.1 glutathione synthase -
  EJN52_RS02195 (BANRA_00422) pilG 453134..453541 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  EJN52_RS02200 (BANRA_00423) pilH 453588..453953 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  EJN52_RS02205 (BANRA_00424) - 454004..454540 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  EJN52_RS02210 (BANRA_00425) pilJ 454625..456673 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  EJN52_RS02215 (BANRA_00426) pilK 456734..457609 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=995704 EJN52_RS02200 WP_003084587.1 453588..453953(+) (pilH) [Pseudomonas aeruginosa isolate paerg011]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=995704 EJN52_RS02200 WP_003084587.1 453588..453953(+) (pilH) [Pseudomonas aeruginosa isolate paerg011]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364

Multiple sequence alignment