Detailed information NTG0995613

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EJN62_RS07440
• Genome accession: NZ_LR130534
• Coordinates: 1557432..1558436 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa isolate paerg005
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1552432..1563436

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJN62_RS07410 (BANRA_01431)	fghA	1552524..1553375 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
EJN62_RS07415 (BANRA_01432)	ispF	1553446..1553919 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EJN62_RS07420 (BANRA_01433)	truD	1553916..1554983 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
EJN62_RS07425 (BANRA_01434)	surE	1554971..1555720 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EJN62_RS07430 (BANRA_01435)	-	1555753..1556388 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EJN62_RS07435 (BANRA_01436)	-	1556434..1557327 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
EJN62_RS07440 (BANRA_01437)	rpoS	1557432..1558436 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EJN62_RS07445 (BANRA_01438)	fdxA	1558863..1559186 (-)	324	WP_003092272.1	ferredoxin FdxA	-
EJN62_RS07450 (BANRA_01439)	mutS	1559253..1561820 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
EJN62_RS07460 (BANRA_01440)	-	1561946..1562953 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=995613 EJN62_RS07440 WP_003113871.1 1557432..1558436(+) (rpoS) [Pseudomonas aeruginosa isolate paerg005]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=995613 EJN62_RS07440 WP_003113871.1 1557432..1558436(+) (rpoS) [Pseudomonas aeruginosa isolate paerg005]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653