Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   AAVB50_RS19110 Genome accession   NZ_CP154923
Coordinates   3565497..3566291 (-) Length   264 a.a.
NCBI ID   WP_029726844.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3560497..3571291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS19075 (AAVB50_19070) ephM 3561340..3562200 (-) 861 WP_076458543.1 epoxide hydrolase EphM -
  AAVB50_RS19080 (AAVB50_19075) spdL 3562187..3562519 (-) 333 WP_003242803.1 SdpC immunity protein SpdL -
  AAVB50_RS19085 (AAVB50_19080) yfhK 3562604..3563122 (-) 519 WP_345805504.1 SH3 domain-containing protein -
  AAVB50_RS19090 (AAVB50_19085) yfhJ 3563267..3563536 (-) 270 WP_015252516.1 YfhJ family protein -
  AAVB50_RS19095 (AAVB50_19090) sspK 3563661..3563813 (+) 153 WP_003223241.1 small, acid-soluble spore protein K -
  AAVB50_RS19100 (AAVB50_19095) yfhI 3563845..3565038 (-) 1194 WP_003243500.1 MFS transporter -
  AAVB50_RS19105 (AAVB50_19100) yfhH 3565181..3565495 (-) 315 WP_003244592.1 YfhH family protein -
  AAVB50_RS19110 (AAVB50_19105) recX 3565497..3566291 (-) 795 WP_029726844.1 recombination regulator RecX Regulator
  AAVB50_RS19115 (AAVB50_19110) yfhF 3566380..3567291 (+) 912 WP_033883295.1 TIGR01777 family oxidoreductase -
  AAVB50_RS19120 (AAVB50_19115) yfhE 3567346..3567456 (+) 111 WP_003223230.1 YfhE family protein -
  AAVB50_RS19125 (AAVB50_19120) yfhD 3567523..3567714 (+) 192 WP_003233561.1 YfhD family protein -
  AAVB50_RS19130 (AAVB50_19125) yfhC 3567753..3568337 (-) 585 WP_003243940.1 nitroreductase -
  AAVB50_RS19135 (AAVB50_19130) yfhB 3568425..3569306 (-) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  AAVB50_RS19140 (AAVB50_19135) sxzA 3569421..3570452 (-) 1032 WP_029317459.1 iron ABC transporter permease -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31047.25 Da        Isoelectric Point: 6.6686

>NTDB_id=995567 AAVB50_RS19110 WP_029726844.1 3565497..3566291(-) (recX) [Bacillus subtilis strain FUA2233]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=995567 AAVB50_RS19110 WP_029726844.1 3565497..3566291(-) (recX) [Bacillus subtilis strain FUA2233]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTTTGGATGATAAATACGCCTT
CAGTGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996

Multiple sequence alignment