Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AAVB50_RS18045 Genome accession   NZ_CP154923
Coordinates   3374275..3374853 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain FUA2233     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3369275..3379853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS18010 (AAVB50_18005) lepB 3369280..3369786 (-) 507 WP_003233128.1 signal peptidase I -
  AAVB50_RS18015 (AAVB50_18010) yhjE 3369788..3370411 (-) 624 WP_010886465.1 VTT domain-containing protein -
  AAVB50_RS18020 (AAVB50_18015) - 3370563..3370925 (+) 363 WP_024571727.1 hypothetical protein -
  AAVB50_RS18025 (AAVB50_18020) yhjC 3371133..3371333 (+) 201 WP_024571728.1 DUF3311 domain-containing protein -
  AAVB50_RS18030 (AAVB50_18025) yhjB 3371330..3372799 (+) 1470 WP_345806471.1 sodium:solute symporter -
  AAVB50_RS18035 (AAVB50_18030) yhjA 3372843..3373112 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  AAVB50_RS18040 (AAVB50_18035) yhxD 3373329..3374228 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  AAVB50_RS18045 (AAVB50_18040) comK 3374275..3374853 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  AAVB50_RS18050 (AAVB50_18045) yhzC 3375146..3375379 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  AAVB50_RS18055 (AAVB50_18050) yhxC 3375407..3376264 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  AAVB50_RS18060 (AAVB50_18055) yhfW 3376376..3377905 (+) 1530 WP_032730444.1 FAD-dependent oxidoreductase -
  AAVB50_RS18065 (AAVB50_18060) hemAT 3378044..3379342 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=995562 AAVB50_RS18045 WP_003245329.1 3374275..3374853(-) (comK) [Bacillus subtilis strain FUA2233]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=995562 AAVB50_RS18045 WP_003245329.1 3374275..3374853(-) (comK) [Bacillus subtilis strain FUA2233]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment