Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AAVB50_RS16025 Genome accession   NZ_CP154923
Coordinates   3007809..3008273 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain FUA2233     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3002809..3013273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS16005 (AAVB50_16000) fadH 3003997..3004761 (-) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -
  AAVB50_RS16010 (AAVB50_16005) ppeE 3004904..3005764 (+) 861 WP_224912829.1 metallophosphoesterase -
  AAVB50_RS16015 (AAVB50_16010) ltdD 3005821..3006315 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  AAVB50_RS16020 (AAVB50_16015) ykuC 3006391..3007683 (+) 1293 WP_224912827.1 MFS transporter -
  AAVB50_RS16025 (AAVB50_16020) kre 3007809..3008273 (+) 465 WP_003232406.1 YkyB family protein Regulator
  AAVB50_RS16030 (AAVB50_16025) cheV 3008317..3009228 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  AAVB50_RS16035 (AAVB50_16030) - 3009432..3009593 (+) 162 WP_003245246.1 hypothetical protein -
  AAVB50_RS16040 (AAVB50_16035) dapX 3009795..3010976 (+) 1182 WP_014479654.1 aminotransferase A -
  AAVB50_RS16045 (AAVB50_16040) kinA 3010987..3012807 (-) 1821 WP_198878747.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=995550 AAVB50_RS16025 WP_003232406.1 3007809..3008273(+) (kre) [Bacillus subtilis strain FUA2233]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=995550 AAVB50_RS16025 WP_003232406.1 3007809..3008273(+) (kre) [Bacillus subtilis strain FUA2233]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment