Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAVB50_RS11445 Genome accession   NZ_CP154923
Coordinates   2100385..2101005 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2095385..2106005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS11425 (AAVB50_11420) dnaD 2095676..2096374 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  AAVB50_RS11430 (AAVB50_11425) nth 2096393..2097052 (+) 660 WP_080529464.1 endonuclease III -
  AAVB50_RS11435 (AAVB50_11430) ypoC 2097049..2097543 (+) 495 WP_029726783.1 YpoC family protein -
  AAVB50_RS11440 (AAVB50_11435) ponA 2097619..2100363 (-) 2745 WP_345806120.1 PBP1A family penicillin-binding protein -
  AAVB50_RS11445 (AAVB50_11440) recU 2100385..2101005 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  AAVB50_RS11450 (AAVB50_11445) yppC 2101046..2102008 (+) 963 WP_345806121.1 DUF2515 domain-containing protein -
  AAVB50_RS11455 (AAVB50_11450) sspM 2102033..2102137 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AAVB50_RS11460 (AAVB50_11455) yppD 2102336..2102581 (+) 246 WP_015251831.1 YppD family protein -
  AAVB50_RS11465 (AAVB50_11460) yppE 2102627..2102998 (+) 372 WP_224912926.1 YppE family protein -
  AAVB50_RS11470 (AAVB50_11465) yppF 2103037..2103225 (-) 189 WP_003230690.1 YppF family protein -
  AAVB50_RS11475 (AAVB50_11470) yppG 2103413..2103790 (+) 378 WP_004398696.1 YppG family protein -
  AAVB50_RS11480 (AAVB50_11475) ypqA 2103811..2104230 (-) 420 WP_224912924.1 Hsp20/alpha crystallin family protein -
  AAVB50_RS11485 (AAVB50_11480) ypqE 2104368..2104874 (+) 507 WP_029726788.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=995542 AAVB50_RS11445 WP_004399067.1 2100385..2101005(-) (recU) [Bacillus subtilis strain FUA2233]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=995542 AAVB50_RS11445 WP_004399067.1 2100385..2101005(-) (recU) [Bacillus subtilis strain FUA2233]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment