Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AAVB50_RS10455 Genome accession   NZ_CP154923
Coordinates   1922979..1923782 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1917979..1928782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS10435 (AAVB50_10430) yqxC 1918090..1918935 (+) 846 WP_160245701.1 TlyA family RNA methyltransferase -
  AAVB50_RS10440 (AAVB50_10435) argR 1919033..1919482 (+) 450 WP_003230265.1 arginine repressor ArgR -
  AAVB50_RS10445 (AAVB50_10440) recN 1919519..1921249 (+) 1731 WP_345806088.1 DNA repair protein RecN Machinery gene
  AAVB50_RS10450 (AAVB50_10445) spoIVB 1921423..1922703 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  AAVB50_RS10455 (AAVB50_10450) spo0A 1922979..1923782 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  AAVB50_RS10460 (AAVB50_10455) yqiG 1924248..1925365 (-) 1118 Protein_1995 NADH-dependent flavin oxidoreductase -
  AAVB50_RS10465 (AAVB50_10460) - 1925438..1925590 (-) 153 WP_014480226.1 hypothetical protein -
  AAVB50_RS10470 (AAVB50_10465) - 1925898..1926194 (+) 297 WP_014480225.1 hypothetical protein -
  AAVB50_RS10475 (AAVB50_10470) yqiI 1926214..1926834 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  AAVB50_RS10480 (AAVB50_10475) glpQ 1926913..1927644 (+) 732 WP_326154223.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=995541 AAVB50_RS10455 WP_003226427.1 1922979..1923782(+) (spo0A) [Bacillus subtilis strain FUA2233]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=995541 AAVB50_RS10455 WP_003226427.1 1922979..1923782(+) (spo0A) [Bacillus subtilis strain FUA2233]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment