Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAVB50_RS09925 Genome accession   NZ_CP154923
Coordinates   1833125..1833892 (+) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain FUA2233     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1828125..1838892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS09895 (AAVB50_09890) pgpH 1828421..1830556 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  AAVB50_RS09900 (AAVB50_09895) ybeY 1830557..1831030 (+) 474 WP_024572410.1 rRNA maturation RNase YbeY -
  AAVB50_RS09905 (AAVB50_09900) unpK 1831011..1831382 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  AAVB50_RS09910 (AAVB50_09905) cdd 1831501..1831911 (+) 411 WP_003230049.1 cytidine deaminase -
  AAVB50_RS09915 (AAVB50_09910) era 1831892..1832797 (+) 906 WP_024572411.1 GTPase Era -
  AAVB50_RS09920 (AAVB50_09915) yqzL 1832945..1833088 (+) 144 WP_003230053.1 YqzL family protein -
  AAVB50_RS09925 (AAVB50_09920) recO 1833125..1833892 (+) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  AAVB50_RS09930 (AAVB50_09925) glyQ 1834190..1835077 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  AAVB50_RS09935 (AAVB50_09930) glyS 1835070..1837109 (+) 2040 WP_345806067.1 glycine--tRNA ligase subunit beta -
  AAVB50_RS09940 (AAVB50_09935) ccpN 1837242..1837880 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  AAVB50_RS09945 (AAVB50_09940) ppsR 1837906..1838718 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=995530 AAVB50_RS09925 WP_014477369.1 1833125..1833892(+) (recO) [Bacillus subtilis strain FUA2233]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=995530 AAVB50_RS09925 WP_014477369.1 1833125..1833892(+) (recO) [Bacillus subtilis strain FUA2233]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTTTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCACAAACGGCAAGGCTGTTAAGACTCTTCTACTATTTTGATTTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment