Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   EJN60_RS13015 Genome accession   NZ_LR130533
Coordinates   2685154..2685678 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa isolate paerg009     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2680154..2690678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN60_RS13000 (BANRA_02530) aroB 2681270..2682376 (-) 1107 WP_023096238.1 3-dehydroquinate synthase -
  EJN60_RS13005 (BANRA_02531) aroK 2682426..2682944 (-) 519 WP_003095833.1 shikimate kinase AroK -
  EJN60_RS13010 (BANRA_02532) pilQ 2682956..2685100 (-) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  EJN60_RS13015 (BANRA_02533) comL/pilP 2685154..2685678 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  EJN60_RS13020 (BANRA_02534) pilO 2685675..2686298 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  EJN60_RS13025 (BANRA_02535) pilN 2686295..2686891 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  EJN60_RS13030 (BANRA_02536) pilM 2686891..2687955 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  EJN60_RS13035 (BANRA_02537) - 2688140..2690611 (+) 2472 WP_003125627.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=995528 EJN60_RS13015 WP_003095836.1 2685154..2685678(-) (comL/pilP) [Pseudomonas aeruginosa isolate paerg009]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=995528 EJN60_RS13015 WP_003095836.1 2685154..2685678(-) (comL/pilP) [Pseudomonas aeruginosa isolate paerg009]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362