Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AAVB50_RS00705 Genome accession   NZ_CP154923
Coordinates   96590..97702 (-) Length   370 a.a.
NCBI ID   WP_043858426.1    Uniprot ID   A0A0D1KVD0
Organism   Bacillus subtilis strain FUA2233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 91590..102702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS00690 (AAVB50_00690) gyrA 91680..94145 (-) 2466 WP_003244540.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  AAVB50_RS00695 (AAVB50_00695) gyrB 94356..96272 (-) 1917 WP_345806529.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AAVB50_RS00700 (AAVB50_00700) remB 96327..96572 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  AAVB50_RS00705 (AAVB50_00705) recF 96590..97702 (-) 1113 WP_043858426.1 DNA replication/repair protein RecF Machinery gene
  AAVB50_RS00710 (AAVB50_00710) rlbA 97718..97933 (-) 216 WP_003226810.1 ribosome maturation protein RlbA -
  AAVB50_RS00715 (AAVB50_00715) dnaN 98064..99200 (-) 1137 WP_003226811.1 DNA polymerase III subunit beta -
  AAVB50_RS00720 (AAVB50_00720) dnaA 99389..100729 (-) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  AAVB50_RS00725 (AAVB50_00725) rpmH 101356..101490 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  AAVB50_RS00730 (AAVB50_00730) rnpA 101642..101992 (+) 351 WP_003242628.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42334.41 Da        Isoelectric Point: 7.3661

>NTDB_id=995501 AAVB50_RS00705 WP_043858426.1 96590..97702(-) (recF) [Bacillus subtilis strain FUA2233]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSLVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPLDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=995501 AAVB50_RS00705 WP_043858426.1 96590..97702(-) (recF) [Bacillus subtilis strain FUA2233]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCTCGTCTACCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGAGGTATCAGATCCCCTAGATTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.459

100

0.995

Multiple sequence alignment