Detailed information NTG0995465

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EJK95_RS18570
• Genome accession: NZ_LR130532
• Coordinates: 3800737..3801729 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate ecoli019
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3795737..3806729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJK95_RS18545 (BANRA_03656)	ygbN	3796392..3797756 (+)	1365	WP_000104439.1	GntP family transporter	-
EJK95_RS18550 (BANRA_03657)	-	3797795..3798031 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EJK95_RS18555 (BANRA_03658)	-	3798042..3799469 (-)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EJK95_RS18560 (BANRA_03659)	-	3799469..3800062 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EJK95_RS18565 (BANRA_03660)	-	3800209..3800616 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
EJK95_RS18570 (BANRA_03661)	rpoS	3800737..3801729 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EJK95_RS18575 (BANRA_03662)	nlpD	3801792..3802886 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EJK95_RS18580 (BANRA_03663)	pcm	3803071..3803697 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EJK95_RS18585 (BANRA_03664)	surE	3803691..3804452 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EJK95_RS18590 (BANRA_03665)	truD	3804433..3805482 (-)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
EJK95_RS18595 (BANRA_03666)	ispF	3805479..3805958 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EJK95_RS18600 (BANRA_03667)	ispD	3805958..3806668 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=995465 EJK95_RS18570 WP_000081550.1 3800737..3801729(-) (rpoS) [Escherichia coli isolate ecoli019]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=995465 EJK95_RS18570 WP_000081550.1 3800737..3801729(-) (rpoS) [Escherichia coli isolate ecoli019]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715