Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAVB74_RS11675 Genome accession   NZ_CP154920
Coordinates   2164889..2165509 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2232     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2159889..2170509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB74_RS11655 (AAVB74_11655) dnaD 2160180..2160878 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  AAVB74_RS11660 (AAVB74_11660) nth 2160897..2161556 (+) 660 WP_080529464.1 endonuclease III -
  AAVB74_RS11665 (AAVB74_11665) ypoC 2161553..2162047 (+) 495 WP_029726783.1 YpoC family protein -
  AAVB74_RS11670 (AAVB74_11670) ponA 2162123..2164867 (-) 2745 WP_345806120.1 PBP1A family penicillin-binding protein -
  AAVB74_RS11675 (AAVB74_11675) recU 2164889..2165509 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  AAVB74_RS11680 (AAVB74_11680) yppC 2165550..2166512 (+) 963 WP_345806121.1 DUF2515 domain-containing protein -
  AAVB74_RS11685 (AAVB74_11685) sspM 2166537..2166641 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AAVB74_RS11690 (AAVB74_11690) yppD 2166840..2167085 (+) 246 WP_015251831.1 YppD family protein -
  AAVB74_RS11695 (AAVB74_11695) yppE 2167131..2167502 (+) 372 WP_224912926.1 YppE family protein -
  AAVB74_RS11700 (AAVB74_11700) yppF 2167541..2167729 (-) 189 WP_003230690.1 YppF family protein -
  AAVB74_RS11705 (AAVB74_11705) yppG 2167917..2168294 (+) 378 WP_004398696.1 YppG family protein -
  AAVB74_RS11710 (AAVB74_11710) ypqA 2168315..2168734 (-) 420 WP_224912924.1 Hsp20/alpha crystallin family protein -
  AAVB74_RS11715 (AAVB74_11715) ypqE 2168872..2169378 (+) 507 WP_029726788.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=995465 AAVB74_RS11675 WP_004399067.1 2164889..2165509(-) (recU) [Bacillus subtilis strain FUA2232]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=995465 AAVB74_RS11675 WP_004399067.1 2164889..2165509(-) (recU) [Bacillus subtilis strain FUA2232]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment