Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAVB74_RS09905 Genome accession   NZ_CP154920
Coordinates   1854558..1854968 (+) Length   136 a.a.
NCBI ID   WP_160221688.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2232     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1849558..1859968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB74_RS09870 (AAVB74_09870) arsR 1849721..1850038 (+) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  AAVB74_RS09875 (AAVB74_09875) yqcK 1850099..1850539 (+) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  AAVB74_RS09880 (AAVB74_09880) acr3 1850562..1851602 (+) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  AAVB74_RS09885 (AAVB74_09885) arsC 1851614..1852033 (+) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  AAVB74_RS09890 (AAVB74_09890) - 1852388..1852566 (+) 179 Protein_1912 hypothetical protein -
  AAVB74_RS09895 (AAVB74_09895) spoIVCA 1852524..1853984 (+) 1461 WP_223257626.1 site-specific DNA recombinase SpoIVCA -
  AAVB74_RS09900 (AAVB74_09900) - 1854015..1854362 (-) 348 Protein_1914 sigma-70 family RNA polymerase sigma factor -
  AAVB74_RS09905 (AAVB74_09905) nucA/comI 1854558..1854968 (+) 411 WP_160221688.1 sporulation-specific Dnase NucB Machinery gene
  AAVB74_RS09910 (AAVB74_09910) yqeB 1855001..1855723 (-) 723 WP_345806059.1 DUF308 domain-containing protein -
  AAVB74_RS09915 (AAVB74_09915) gnd 1855975..1856868 (+) 894 WP_345806060.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  AAVB74_RS09920 (AAVB74_09920) yqeD 1856887..1857513 (-) 627 WP_038427798.1 TVP38/TMEM64 family protein -
  AAVB74_RS09925 (AAVB74_09925) cwlH 1857700..1858452 (+) 753 WP_087961324.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  AAVB74_RS09930 (AAVB74_09930) yqeF 1858704..1859435 (+) 732 WP_003229964.1 SGNH/GDSL hydrolase family protein -
  AAVB74_RS09935 (AAVB74_09935) - 1859741..1859881 (-) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14994.06 Da        Isoelectric Point: 5.1853

>NTDB_id=995449 AAVB74_RS09905 WP_160221688.1 1854558..1854968(+) (nucA/comI) [Bacillus subtilis strain FUA2232]
MKKWMAGLFLAAAVLLCLMVPQQIQGASLYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=995449 AAVB74_RS09905 WP_160221688.1 1854558..1854968(+) (nucA/comI) [Bacillus subtilis strain FUA2232]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTTGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529

Multiple sequence alignment