Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AAVB74_RS03945 Genome accession   NZ_CP154920
Coordinates   752013..752735 (+) Length   240 a.a.
NCBI ID   WP_345805836.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2232     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 747013..757735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB74_RS03920 (AAVB74_03920) degS 747324..748481 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AAVB74_RS03925 (AAVB74_03925) degU 748564..749253 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAVB74_RS03930 (AAVB74_03930) fakBA 749351..750196 (+) 846 WP_003244125.1 DegV family protein -
  AAVB74_RS03935 (AAVB74_03935) comFA 750302..751693 (+) 1392 WP_345805835.1 ATP-dependent helicase ComFA Machinery gene
  AAVB74_RS03940 (AAVB74_03940) comFB 751753..752049 (+) 297 WP_015483764.1 late competence protein ComFB -
  AAVB74_RS03945 (AAVB74_03945) comFC 752013..752735 (+) 723 WP_345805836.1 comF operon protein ComFC Machinery gene
  AAVB74_RS03950 (AAVB74_03950) yvyF 752809..753228 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AAVB74_RS03955 (AAVB74_03955) flgM 753309..753575 (+) 267 WP_128738293.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAVB74_RS03960 (AAVB74_03960) flgN 753591..754073 (+) 483 WP_003227999.1 flagellar protein FlgN -
  AAVB74_RS03965 (AAVB74_03965) flgK 754092..755615 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  AAVB74_RS03970 (AAVB74_03970) flgL 755626..756522 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  AAVB74_RS03975 (AAVB74_03975) yviE 756569..757144 (+) 576 WP_014481045.1 DUF6470 family protein -
  AAVB74_RS03980 (AAVB74_03980) fliW 757165..757596 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27419.70 Da        Isoelectric Point: 9.4913

>NTDB_id=995435 AAVB74_RS03945 WP_345805836.1 752013..752735(+) (comFC) [Bacillus subtilis strain FUA2232]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPVSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=995435 AAVB74_RS03945 WP_345805836.1 752013..752735(+) (comFC) [Bacillus subtilis strain FUA2232]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGGTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAATCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGTG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment