Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   EJM92_RS19805 Genome accession   NZ_LR130531
Coordinates   4205195..4205560 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa isolate paerg004     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4200195..4210560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJM92_RS19775 (BANRA_03837) pyrR 4200817..4201329 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  EJM92_RS19780 (BANRA_03838) ruvX 4201441..4201875 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  EJM92_RS19785 (BANRA_03839) - 4201875..4202444 (-) 570 WP_070870543.1 YqgE/AlgH family protein -
  EJM92_RS19790 (BANRA_03840) - 4202493..4203386 (-) 894 WP_003160914.1 energy transducer TonB -
  EJM92_RS19795 (BANRA_03841) gshB 4203533..4204486 (-) 954 WP_003100943.1 glutathione synthase -
  EJM92_RS19800 (BANRA_03842) pilG 4204741..4205148 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  EJM92_RS19805 (BANRA_03843) pilH 4205195..4205560 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  EJM92_RS19810 (BANRA_03844) - 4205611..4206147 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  EJM92_RS19815 (BANRA_03845) pilJ 4206232..4208280 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  EJM92_RS19820 (BANRA_03846) pilK 4208341..4209216 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=995380 EJM92_RS19805 WP_003084587.1 4205195..4205560(+) (pilH) [Pseudomonas aeruginosa isolate paerg004]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=995380 EJM92_RS19805 WP_003084587.1 4205195..4205560(+) (pilH) [Pseudomonas aeruginosa isolate paerg004]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364