Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AAYR29_RS09285 Genome accession   NZ_CP154918
Coordinates   1722218..1722496 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain FUA2231     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1717218..1727496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS09265 (AAYR29_09265) ade 1717282..1719015 (-) 1734 WP_345806384.1 adenine deaminase -
  AAYR29_RS09270 (AAYR29_09270) ktrC 1719171..1719836 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  AAYR29_RS09275 (AAYR29_09275) ykqA 1719899..1720726 (-) 828 WP_327826676.1 gamma-glutamylcyclotransferase -
  AAYR29_RS09280 (AAYR29_09280) kinC 1720742..1722028 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  AAYR29_RS09285 (AAYR29_09285) abrB 1722218..1722496 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  AAYR29_RS09290 (AAYR29_09290) mreBH 1722780..1723787 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  AAYR29_RS09295 (AAYR29_09295) ykpC 1723888..1724022 (+) 135 WP_003238865.1 protein YkpC -
  AAYR29_RS09300 (AAYR29_09300) ampS 1724131..1725363 (+) 1233 WP_003232341.1 aminopeptidase -
  AAYR29_RS09305 (AAYR29_09305) - 1725397..1726308 (-) 912 WP_021479370.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=995371 AAYR29_RS09285 WP_003244728.1 1722218..1722496(-) (abrB) [Bacillus subtilis strain FUA2231]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=995371 AAYR29_RS09285 WP_003244728.1 1722218..1722496(-) (abrB) [Bacillus subtilis strain FUA2231]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment