Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAYR29_RS03925 Genome accession   NZ_CP154918
Coordinates   673734..675464 (+) Length   576 a.a.
NCBI ID   WP_345806088.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 668734..680464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS03900 (AAYR29_03900) xseB 669098..669352 (+) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -
  AAYR29_RS03905 (AAYR29_03905) ispA 669342..670232 (+) 891 WP_345806087.1 polyprenyl synthetase family protein -
  AAYR29_RS03910 (AAYR29_03910) dxs 670407..672308 (+) 1902 WP_015384069.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AAYR29_RS03915 (AAYR29_03915) yqxC 672305..673150 (+) 846 WP_160245701.1 TlyA family RNA methyltransferase -
  AAYR29_RS03920 (AAYR29_03920) argR 673248..673697 (+) 450 WP_003230265.1 arginine repressor ArgR -
  AAYR29_RS03925 (AAYR29_03925) recN 673734..675464 (+) 1731 WP_345806088.1 DNA repair protein RecN Machinery gene
  AAYR29_RS03930 (AAYR29_03930) spoIVB 675638..676918 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  AAYR29_RS03935 (AAYR29_03935) spo0A 677194..677997 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  AAYR29_RS03940 (AAYR29_03940) yqiG 678463..679580 (-) 1118 Protein_727 NADH-dependent flavin oxidoreductase -
  AAYR29_RS03945 (AAYR29_03945) - 679653..679805 (-) 153 WP_014480226.1 hypothetical protein -
  AAYR29_RS03950 (AAYR29_03950) - 680113..680409 (+) 297 WP_014480225.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64508.35 Da        Isoelectric Point: 4.7697

>NTDB_id=995363 AAYR29_RS03925 WP_345806088.1 673734..675464(+) (recN) [Bacillus subtilis strain FUA2231]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDASFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=995363 AAYR29_RS03925 WP_345806088.1 673734..675464(+) (recN) [Bacillus subtilis strain FUA2231]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCTTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAGTCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTTGGAATGGCATCAGCGCAGCTTGAAGATATATCTGATATAAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCTCATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCCTGAACTATATTGAGACGCGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGATAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCGCCGCTTGTAAACGGCCAGCCCGTTCAGCTGACTGAACAAGGTATTGACCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAACAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGTTCACAAGTGCTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGCATGATTGCAGGTGTCGAGGTAACCGATTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment