Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   AAVC46_RS18085 Genome accession   NZ_CP154913
Coordinates   3551580..3552371 (+) Length   263 a.a.
NCBI ID   WP_307499322.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2119     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3546580..3557371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS18050 (AAVC46_18050) - 3546663..3547211 (+) 549 WP_034665029.1 thioredoxin family protein -
  AAVC46_RS18055 (AAVC46_18055) - 3547548..3548015 (+) 468 WP_066031146.1 DUF393 domain-containing protein -
  AAVC46_RS18060 (AAVC46_18060) - 3548052..3549308 (-) 1257 WP_066031145.1 transcriptional regulator -
  AAVC46_RS18065 (AAVC46_18065) - 3549582..3550169 (+) 588 WP_223256567.1 nitroreductase -
  AAVC46_RS18070 (AAVC46_18070) - 3550206..3550361 (-) 156 WP_034665021.1 YfhD family protein -
  AAVC46_RS18075 (AAVC46_18075) - 3550423..3550536 (-) 114 WP_080869592.1 YfhE family protein -
  AAVC46_RS18080 (AAVC46_18080) - 3550589..3551485 (-) 897 WP_340972093.1 TIGR01777 family oxidoreductase -
  AAVC46_RS18085 (AAVC46_18085) recX 3551580..3552371 (+) 792 WP_307499322.1 recombination regulator RecX Regulator
  AAVC46_RS18090 (AAVC46_18090) - 3552375..3552689 (+) 315 WP_106031317.1 YfhH family protein -
  AAVC46_RS18095 (AAVC46_18095) - 3552898..3553071 (-) 174 WP_003217811.1 YpzG family protein -
  AAVC46_RS18100 (AAVC46_18100) - 3553097..3553246 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  AAVC46_RS18105 (AAVC46_18105) - 3553363..3553635 (+) 273 WP_034665009.1 YfhJ family protein -
  AAVC46_RS18110 (AAVC46_18110) - 3553926..3554909 (+) 984 WP_034665005.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30584.01 Da        Isoelectric Point: 6.7749

>NTDB_id=995340 AAVC46_RS18085 WP_307499322.1 3551580..3552371(+) (recX) [Bacillus pumilus strain FUA2119]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIEIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDTIEQALSQYPDDLQLEE
AVNHVLKLVRKEKNRSAKEIEQRIKLQLQRKGFSFAIIDKALQEAYDGQEEEKEEEALLYMLEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=995340 AAVC46_RS18085 WP_307499322.1 3551580..3552371(+) (recX) [Bacillus pumilus strain FUA2119]
ATGCCCTATATTACAAAAATCTCCGCTCAGAAAAACAATACGGAGCGGGTGAACATCTTTCTTGATGAAAAGTACGCCTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCACGATTTGAAAAAAGGGAAAGAGCTGGACGAAGCAGATATCATTGAAATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTG
ACCGATTATTTGACGAAAAAAGAAATTCCAGCGCCTGCTATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTTGAATTTGCGGAAGCCTATGTAAGCACCCACCGTAAAACGAACAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGTTAAAGCTTAAAGGGATAGACGATGACACCATTGAACAAGCGCTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCCGTCAATCATGTTCTCAAGCTTGTGAGAAAAGAAAAGAATCGTTCTGCAAAAGAGATCGAGCAGCGCATCAAGCTTCA
GCTTCAGCGAAAGGGATTTTCGTTTGCGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCCCTCCTCTATATGCTGGAGAAGGCAAAACGCAAGGTAGGATATGACGGATCATTTGAAAAGAAGATGAAA
GTGAAGCAGTTTTTATTCAGAAAAGGCTTTGATCTCGATACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

63.498

100

0.635

Multiple sequence alignment