Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAVC46_RS16035 Genome accession   NZ_CP154913
Coordinates   3070696..3071124 (-) Length   142 a.a.
NCBI ID   WP_034664156.1    Uniprot ID   A0AAE3WLD3
Organism   Bacillus pumilus strain FUA2119     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3065696..3076124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS16005 (AAVC46_16005) - 3065851..3066180 (+) 330 WP_307500646.1 YckD family protein -
  AAVC46_RS16010 (AAVC46_16010) - 3066232..3066996 (-) 765 WP_106031573.1 MBL fold metallo-hydrolase -
  AAVC46_RS16015 (AAVC46_16015) - 3067112..3067528 (+) 417 WP_034664465.1 Lrp/AsnC family transcriptional regulator -
  AAVC46_RS16020 (AAVC46_16020) - 3067557..3068363 (+) 807 WP_307499020.1 AAC(3) family N-acetyltransferase -
  AAVC46_RS16025 (AAVC46_16025) - 3068365..3068751 (-) 387 WP_106038505.1 competence protein ComJ -
  AAVC46_RS16030 (AAVC46_16030) - 3068872..3070569 (-) 1698 WP_345820819.1 methyl-accepting chemotaxis protein -
  AAVC46_RS16035 (AAVC46_16035) nucA/comI 3070696..3071124 (-) 429 WP_034664156.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAVC46_RS16040 (AAVC46_16040) - 3071492..3073561 (+) 2070 WP_334750770.1 hydantoinase/oxoprolinase family protein -
  AAVC46_RS16045 (AAVC46_16045) - 3073551..3075536 (+) 1986 WP_334750771.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15886.79 Da        Isoelectric Point: 5.5444

>NTDB_id=995338 AAVC46_RS16035 WP_034664156.1 3070696..3071124(-) (nucA/comI) [Bacillus pumilus strain FUA2119]
MKLLKIILLLLLIVVGVATGYIQLEQSKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRKHSDEQRDQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=995338 AAVC46_RS16035 WP_034664156.1 3070696..3071124(-) (nucA/comI) [Bacillus pumilus strain FUA2119]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTAATCGTCGTTGGTGTAGCAACAGGCTATATTCAACTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAAACCATTCACTTCCCATCAGATCGTTACCCAGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGCCATTCATCCGTATGTACGATTGACCGTAAACATAGCGATGAACAGAGAGACCAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCTGTCAAATATATCAGTCCTTCAGATAATAGGGGAGCAGGCTCATGGGTCGGTCATCAATTATCCGATGATCCTGACG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.116

85.211

0.563

Multiple sequence alignment