Detailed information NTG0995333

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AAVC46_RS14205
• Genome accession: NZ_CP154913
• Coordinates: 2730783..2731895 (+)
• Length: 370 a.a.
• NCBI ID: WP_106031706.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain FUA2119
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2725783..2736895

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAVC46_RS14180 (AAVC46_14180)	rnpA	2726535..2726894 (-)	360	WP_034660668.1	ribonuclease P protein component	-
AAVC46_RS14185 (AAVC46_14185)	rpmH	2726973..2727107 (-)	135	WP_008360908.1	50S ribosomal protein L34	-
AAVC46_RS14190 (AAVC46_14190)	dnaA	2727727..2729067 (+)	1341	WP_034660669.1	chromosomal replication initiator protein DnaA	-
AAVC46_RS14195 (AAVC46_14195)	dnaN	2729264..2730400 (+)	1137	WP_034660670.1	DNA polymerase III subunit beta	-
AAVC46_RS14200 (AAVC46_14200)	yaaA	2730551..2730766 (+)	216	WP_003215257.1	S4 domain-containing protein YaaA	-
AAVC46_RS14205 (AAVC46_14205)	recF	2730783..2731895 (+)	1113	WP_106031706.1	DNA replication/repair protein RecF	Machinery gene
AAVC46_RS14210 (AAVC46_14210)	-	2731913..2732158 (+)	246	WP_008360920.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
AAVC46_RS14215 (AAVC46_14215)	gyrB	2732216..2734132 (+)	1917	WP_060597746.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
AAVC46_RS14220 (AAVC46_14220)	gyrA	2734365..2736869 (+)	2505	WP_060597709.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42531.58 Da
• Isoelectric Point: 7.3662

>NTDB_id=995333 AAVC46_RS14205 WP_106031706.1 2730783..2731895(+) (recF) [Bacillus pumilus strain FUA2119]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYDESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide

• Length: 1113 bp

>NTDB_id=995333 AAVC46_RS14205 WP_106031706.1 2730783..2731895(+) (recF) [Bacillus pumilus strain FUA2119]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAACAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCGCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGAAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCACCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGATATGGAGATTGGACAAGTTTCGGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAGAAATGGGCGCAGCCGTTGCATTTTGGCA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACGGCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGATGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGAGTGACACTGTGGGGGCCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATCGACCTGATACATGAAGAAATCGGAGAATATCCCATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	83.74	99.73	0.835