Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AAVC46_RS06855 Genome accession   NZ_CP154913
Coordinates   1313406..1314476 (-) Length   356 a.a.
NCBI ID   WP_034661296.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2119     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1308406..1319476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS06805 (AAVC46_06805) - 1308501..1309073 (-) 573 WP_066031752.1 signal peptidase I -
  AAVC46_RS06810 (AAVC46_06810) tapA 1309125..1309652 (-) 528 WP_307499920.1 amyloid fiber anchoring/assembly protein TapA -
  AAVC46_RS06815 (AAVC46_06815) - 1309951..1310229 (+) 279 WP_307500677.1 DUF3889 domain-containing protein -
  AAVC46_RS06820 (AAVC46_06820) - 1310263..1310457 (-) 195 WP_024718846.1 YqzE family protein -
  AAVC46_RS06825 (AAVC46_06825) comGG 1310516..1310899 (-) 384 WP_340973305.1 competence type IV pilus minor pilin ComGG -
  AAVC46_RS06830 (AAVC46_06830) comGF 1310896..1311396 (-) 501 WP_340973308.1 competence type IV pilus minor pilin ComGF -
  AAVC46_RS06835 (AAVC46_06835) comGE 1311335..1311652 (-) 318 WP_034661291.1 competence type IV pilus minor pilin ComGE -
  AAVC46_RS06840 (AAVC46_06840) comGD 1311636..1312082 (-) 447 WP_066030666.1 competence type IV pilus minor pilin ComGD -
  AAVC46_RS06845 (AAVC46_06845) comGC 1312075..1312368 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene
  AAVC46_RS06850 (AAVC46_06850) comGB 1312385..1313425 (-) 1041 WP_340973310.1 competence type IV pilus assembly protein ComGB -
  AAVC46_RS06855 (AAVC46_06855) comGA 1313406..1314476 (-) 1071 WP_034661296.1 competence type IV pilus ATPase ComGA Machinery gene
  AAVC46_RS06860 (AAVC46_06860) - 1314654..1315526 (-) 873 WP_345821643.1 STAS domain-containing protein -
  AAVC46_RS06870 (AAVC46_06870) - 1315751..1316131 (-) 381 WP_034661298.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AAVC46_RS06875 (AAVC46_06875) - 1316342..1316584 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  AAVC46_RS06880 (AAVC46_06880) - 1316633..1317271 (-) 639 WP_095285390.1 MBL fold metallo-hydrolase -
  AAVC46_RS06885 (AAVC46_06885) - 1317429..1317602 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  AAVC46_RS06890 (AAVC46_06890) - 1317626..1317940 (-) 315 WP_034662003.1 MTH1187 family thiamine-binding protein -
  AAVC46_RS06895 (AAVC46_06895) - 1318018..1319271 (-) 1254 WP_340973313.1 MFS transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40265.61 Da        Isoelectric Point: 9.0692

>NTDB_id=995308 AAVC46_RS06855 WP_034661296.1 1313406..1314476(-) (comGA) [Bacillus pumilus strain FUA2119]
MYGIEYLGQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRSGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASTRLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDLIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGETCQLYCKLNRPVRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=995308 AAVC46_RS06855 WP_034661296.1 1313406..1314476(-) (comGA) [Bacillus pumilus strain FUA2119]
TTGTATGGTATTGAATATTTGGGACAAGAGCTGCTAGAAGAAGCATGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
AAAAGAAAAGGAAGCGTCGGTATCTTTCCGCGTAGACTCAGATTTAATTCAGCAGCGAACCATTGATAAAAAAAGCGGCG
AGCGGCTCATTGCTCATTTTAAATTTTTATCATCCATGGATATCGGGGAAAAAAGGAGGCCGCAAAATGGGTCACTAGCT
GTGATGCTAAGAAGCGGCCAGGTGTTTATTCGGATGTCTACCTTACCAACTGTAAATGATGAGAGCTTAGTGATTAGAAT
ATTGCCGCAGGATCATGTTCCAAAAATAAAACATCTGTCACTATTTCCGAAAGCCTCCACCAGGTTATTATCATTTTTGA
ATCATTCGCATGGGCTGATTTTATTTACCGGTCCAACAAATTCAGGGAAAACAACAACCCTTTATTCATTAATCCAGTTT
GCAAAAAAGAATTTCAACCGAAATATTATTACACTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGTTACAGGTTCA
AGTGAATGAAAAAGCCGGCATCACATATGCCGCAGGATTACGTGCTATTTTAAGACATGATCCAGATCTGATTGTGCTAG
GAGAAATAAGAGATGCCGAAACGGCCCGAACGGCAATTAGAGCAGCACTGACAGGCCATTTAGTGATGAGTACGCTCCAT
GCGAAAAATGCAAAAGGAGCCCTTTATCGTATGCTTGAATTTGGTGTCACAATGAATGAACTCGAACAAACGATGGTTGC
GATTGCTGCGCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAAACATGTCAGCTTTACTGTAAATTAAATCGAC
CGGTCAGACGAACAAATGTATTTGAACTGCTGTTCGGAAAGGAGCTCGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACACTGCAAAGATTAATTCGTAAAGGAGTGGCACTAGGCTATTTATCGAAAAACACCTATCA
TCGCTGGGTTTATGAAGAAGCAAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.124

99.438

0.638

Multiple sequence alignment